Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01001 GGTCTTAATCGGTGTGGGAAGAGTTGCAGGCTAAGATGGCTGAATTACCTGAGACCCAACATTAAGAGAGGCAATATATCAGACCAGGAAGAGGATCTGATTCTCAGGCTTCACAAGCTTCTCGGAAACAGGTGGTCTTTGATCGCCGGAAGATTGCCGGGTCGAACAGATAATGAGATTAAAAACTACTGGAATTCTCATTTGAGCAAGAAAATAAAGCAAAGCGAGGCTTCAAAAAGGAGAGCGGCGCTGGACGACCAGAAGACAGGTGAAGAGACAGGAGAGGAAGCGTCGGCAGCTGAGAAAGAACAACCGTCGAAAATGGAGTTCGACGCCGATGACTTCTTTGATTTTTCCGACGAAGTGCTTAATTTAGAGTGGGTTAGCAAATTCTTTGAATTTCAAGTAGGGTTTTAG 417 45.32 GLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQSEASKRRAALDDQKTGEETGEEASAAEKEQPSKMEFDADDFFDFSDEVLNLEWVSKFFEFQVGF 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 39420714 39421212 + Bma026164.1 Bma07g01001 86138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01001 138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 72 IPR017930 -
Bma07g01001 138 PANTHER TRANSCRIPTION FACTOR WER-LIKE ISOFORM X1 1 136 - -
Bma07g01001 138 CDD SANT 27 68 IPR001005 -
Bma07g01001 138 SMART sant 22 70 IPR001005 -
Bma07g01001 138 SUPERFAMILY Homeodomain-like 3 76 IPR009057 -
Bma07g01001 138 Gene3D - 2 22 - -
Bma07g01001 138 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 136 - -
Bma07g01001 138 MobiDBLite consensus disorder prediction 75 107 - -
Bma07g01001 138 ProSiteProfiles Myb-like domain profile. 18 68 IPR001005 -
Bma07g01001 138 Pfam Myb-like DNA-binding domain 23 68 IPR001005 -
Bma07g01001 138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 17 IPR017930 -
Bma07g01001 138 Gene3D - 26 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01001 K09422 MYBP; transcription factor MYB, plant - jre:109001983 191.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00869 Bma-Chr5:46289968 Bma07g01001 Bma-Chr7:39420714 2.35E-15 dispersed
Bma07g00650 Bma-Chr7:10747542 Bma07g01001 Bma-Chr7:39420714 1.57E-91 dispersed
Bma07g01001 Bma-Chr7:39420714 Bma13g01219 Bma-Chr13:45460474 1.20E-71 dispersed
Bma07g01001 Bma-Chr7:39420714 Bma10g00724 Bma-Chr10:11425159 2.79E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g831 . . . . . . Bma07g01001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003424 4 1 3 6 3 1 1 1 1 1 1 1 1 1 1 2 1 4 1 1 1 1 1 0 0 1 1 1 1 2 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57647 PF00249 Myb_DNA-binding 5.90E-14 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01001 Bma_Chr07 FPKM 11.559876 12.67972 27.003572 28.240406 79.780823 83.260002 74.466484 34.537506 34.75597 33.15514