Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01005 ATGGCAACTCAAATTCACGAAGCAGCCCATAAAATTCTCACCCCAGAGATTATACTCTCTGCAGCCAAGCAATCCCAACGCTGTCTCATCGTCCCCGTCCGTCTTCGTCGTGCCATTAAAAAATATCTTCGAGAGCTAGACGAACCCCACATGAAGAGGAATGTGTTGAGACTTTCGCAATCTTTCAGTGAAATCAAGGATGTTAATCTGCAGCTCACCACTTCCACTTCTAAGGAGGTCGTTGAAGACCCTTTGAAATTCGTGGAACAATCCAGGCGCTGGAAGATTACGAGCTCTTATGGCGACATAGGGCTGAAGTATAGGGAGAATGAGACTGCTGCTTATGTAGCTTCTAGAATGCCTGCTGTTTTCTCTGCCTGTTACAGAGTGCTGAAGGAGGTTCGTAGAAGAGTACCAGATTTCAGGCCAGGTAAAGTGTTGGATTTTGGAGCTGGCACTGGATCAGCTTTCTGGGCATTACAAGAAGTCTGGCCACAGACAATCCAAAAGGTTAATTTAGTAGAGCCATCACAATCTATGCAACGTGCAGGTCGAAATCTTATTCAAGGTCTGAAGAATTTGCCGCTAATACATAGTTATGACAGCATTCAGTCACTTACTAAAAGTATCAGCAAGTCGGGCAGAGAGCACGATCTTGTGATTGCTTCATATGTGCTTGGGGAGATACCATCTTTGAAGGATCGAATTACTATAGTACGACAACTTTGGGATCTTACGCGTGATGTTCTGGTCTTGGTTGAACCTGGAACTCCACATGGCTCCAATATCATATCTCAGATGCGGTCCCATATTTTATGGATGGAAAAGAGGAAGTACCGAAAACTTGAAAAGGGAATTAATGCAGAATCAAAAGACCTAATTTCTGAAAGATGTGGTGCATATATAGTTTCTCCTTGTCCTCATGATGGCCGCTGTCCTTTAGAGAACACTGGAAAATATTGTCACTTTGTTCAGCGCTTGGAGAGAACATCCTCTCAACGAGTATATAAGCGCTCCAAGGGTGAACCTTTGCGAGGTTTTGAAGATGAGAAGTTCTCTTATATTGCGTTTAGACGTGGACAACGACCACGTGAGTCGTGGCCTCTGGATGGGATGAAATTCGAAACTTTAAAGGAACAACACGCCAAAAGAAATCCAGAAGATATGGAAATTGACTATGAGGACATGCTAAAATTATACGTTCAGCACATTCCATATAAGGAAGCCGATCCAGTTACTTATGATTCCGATGCAGTCGAAACTGAGACTGCTGACGAACTTTTGGAGGAGGAAGGGGACGAAGAAAACAAAAAGTCGAGTGCTGATTTGGGCGGCGGGTGGGGACGGATCCTATTTCCACCGATTCGAAGAGGAAGGCAGGTTTCGATGGATGTATGTAGGTCGGCAAAGAGGGATGCCTCAGAAGGCTCATTTGAGCGAGTCATTGTCACCCAAAGTAAGAATCCTACTTTACATCGCCAAGCTAGAAAATCTTTTTGGGGTGACTTGTGGCCTTTTTGA 1521 44.38 MATQIHEAAHKILTPEIILSAAKQSQRCLIVPVRLRRAIKKYLRELDEPHMKRNVLRLSQSFSEIKDVNLQLTTSTSKEVVEDPLKFVEQSRRWKITSSYGDIGLKYRENETAAYVASRMPAVFSACYRVLKEVRRRVPDFRPGKVLDFGAGTGSAFWALQEVWPQTIQKVNLVEPSQSMQRAGRNLIQGLKNLPLIHSYDSIQSLTKSISKSGREHDLVIASYVLGEIPSLKDRITIVRQLWDLTRDVLVLVEPGTPHGSNIISQMRSHILWMEKRKYRKLEKGINAESKDLISERCGAYIVSPCPHDGRCPLENTGKYCHFVQRLERTSSQRVYKRSKGEPLRGFEDEKFSYIAFRRGQRPRESWPLDGMKFETLKEQHAKRNPEDMEIDYEDMLKLYVQHIPYKEADPVTYDSDAVETETADELLEEEGDEENKKSSADLGGGWGRILFPPIRRGRQVSMDVCRSAKRDASEGSFERVIVTQSKNPTLHRQARKSFWGDLWPF 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40046367 40051730 - Bma026175.1 Bma07g01005 86142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01005 506 Pfam Mitochondrial small ribosomal subunit Rsm22 111 275 IPR015324 GO:0006412|GO:0008168
Bma07g01005 506 Pfam Mitochondrial small ribosomal subunit Rsm22 291 505 IPR015324 GO:0006412|GO:0008168
Bma07g01005 506 Gene3D Vaccinia Virus protein VP39 96 293 IPR029063 -
Bma07g01005 506 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 128 268 IPR029063 -
Bma07g01005 506 MobiDBLite consensus disorder prediction 414 441 - -
Bma07g01005 506 PANTHER 37S RIBOSOMAL PROTEIN S22 36 506 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01005 - - - csv:101205106 795.808
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01005 Bma12g00247 CCT
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g784 . . Bda06g01235 . . Bpe07g00244 Bma07g01005 . Cmo06g00621 Cmo16g01249 . . . . . Cpe14g00994 . . . . . . . . Cla10g00118 Cam10g0115 Cec10g0124 Cco10g0124 Clacu10g0121 Cmu10g0968 Cre10g0378 . . . . Lsi07g01149 . . Cme06g02425 . . . . . . . Bma12g00247 . . . Cma06g00614 Cma16g01202 Car06g00547 Car16g01132 . . . . . . . . . . . . . . . . . Csa03g00119 Chy06g02185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011578 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01005 Bma_Chr07 FPKM 0.45967 0.437527 0.0 0.0 0.350165 0.439754 0.414133 0.027839 0.029405 0.030981