Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01022 GGAATTCCAGAAATGGGTTCTGCAGATCGGATCAAAGAAGATTGGGAACTATCGCAGCTCGAGAAATCTCCCTTGAGATCTGATATTTGGAATAACATGAACTCCATTGATGTTGGTTGGCTTTCAGGATCTCAAGAAGAATGGAGTGCATTACAGGAGAAGCAATACACACAGAAGCGCGGAAAGATCGATACTTTTCTTCTGCACGGAGGGTCATCGTCGGATTCTGGCAGATCCAATTCCGACGGAAACTTCGATCGGATCAATCAAACCAAGAGACGAGGGAGAAAGCCGGCGGAGCAAAAGGAAACGGGAGTCAACCACGTGCAGGCGGAGAGGCAGCGAAGAGAGAACCTAAACCGGAGATTTTATGCTCTCCGATCAGCCGTTCCAAATGTGTCTAAGATGGACAAAGCCTCTTTACTTGCCGACGCAGTTGTGTACATAAACAAGCTAAAAGCAAAGATTGAAGAACTGAAACTCCAAGCACAATCTATGAATAGTCCTAAAATGCCGGCTTCCGTAGCTAACGCTGCTACAGATTTCATCTTTAACAACGGGGAATGGTCGTCGGAAAATATTTTTGACAACGTTTACAAAATCCAACCACTGTCCTTGATTGGTGGGTCGGCCGCCATTGACGTGGACGTGAAGATTATGGGTACGGAGGCTGTTATCCGCGCCCACGGCAATGATCAGGGCCATCCACCGGCTAGATTGATGAGCGTTCTTGGAGAGCTAGATCTGCAAATTCACCACGCAAGCATATCGAAGGTGAACGAGCTGATGCTGCAAGATGTTGTGGTCAGACTTCCTGAAGGACTTAACAATGAGAAAGCCATTAGAAGTGTTATTTTCCAAAAACTGAATAGCTAA 876 46.35 GIPEMGSADRIKEDWELSQLEKSPLRSDIWNNMNSIDVGWLSGSQEEWSALQEKQYTQKRGKIDTFLLHGGSSSDSGRSNSDGNFDRINQTKRRGRKPAEQKETGVNHVQAERQRRENLNRRFYALRSAVPNVSKMDKASLLADAVVYINKLKAKIEELKLQAQSMNSPKMPASVANAATDFIFNNGEWSSENIFDNVYKIQPLSLIGGSAAIDVDVKIMGTEAVIRAHGNDQGHPPARLMSVLGELDLQIHHASISKVNELMLQDVVVRLPEGLNNEKAIRSVIFQKLNS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40965753 40966628 + Bma026208.1 Bma07g01022 86159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01022 291 Coils Coil 142 162 - -
Bma07g01022 291 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 1 289 - -
Bma07g01022 291 SMART finulus 109 158 IPR011598 GO:0046983
Bma07g01022 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 152 IPR011598 GO:0046983
Bma07g01022 291 Gene3D - 92 168 IPR036638 GO:0046983
Bma07g01022 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 168 IPR036638 GO:0046983
Bma07g01022 291 MobiDBLite consensus disorder prediction 69 86 - -
Bma07g01022 291 MobiDBLite consensus disorder prediction 68 114 - -
Bma07g01022 291 Pfam Helix-loop-helix DNA-binding domain 107 152 IPR011598 GO:0046983
Bma07g01022 291 MobiDBLite consensus disorder prediction 87 114 - -
Bma07g01022 291 PANTHER MYC 1 289 IPR045084 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01022 - - K13422 pvy:116120907 236.498
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01022 Bma-Chr7:40965753 Bma14g00153 Bma-Chr14:2131378 1.97E-42 dispersed
Bma07g01022 Bma-Chr7:40965753 Bma04g00924 Bma-Chr4:12939830 1.83E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g242 . . . . . Bpe07g00211 Bma07g01022 . Cmo06g00587 Cmo16g01278 . . . . . Cpe14g01018 . . . . . . . . Cla10g00083 Cam10g0080 Cec10g0083 Cco10g0087 Clacu10g0081 Cmu10g0928 Cre10g0343 . . . . Lsi07g01109 . . Cme06g02389 Blo03g00803 . . . Bpe08g00900 . . . . . . Cma06g00583 Cma16g01232 Car06g00517 Car16g01160 Cpe08g00916 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018153 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57648 PF00010 HLH 3.80E-10 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01022 Bma_Chr07 FPKM 21.859257 23.873514 47.605854 44.90546 28.499908 26.189304 30.907974 129.629059 131.299301 139.844498