Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01033 ATGGAGAACCAACTCAGCAATTCGACGACGGATTCCACCGGAAAAGTCATCACTTGCAAAGCTGCTGTGGTATGGGGTCCTGGAGAGCCTTTCGTCATAGAACAAGTTAGAGTGGATCCGCCGGAAAAAATGGAGGTTCGACTGAAAATCTTGTTCACTTCAGTCTGTCACACCGATCTCAGTGCTTGGAAAGGCCAGATGCCTGAATCTCAACGAGCTTATCCGATAATTCTAGGCCATGAGGCTGTTGGAATAGTAGAGAGCGTGGGAGAGGGGGTAAGAGAGGTCAAAGCCGGAGACTACGTCATTCCTCTTTTCAACGGCGAGTGTGGCCACTGCGTTTACTGCAAATGCGAGAAGACGAACAAGTGCGTCCATTTCGGGGTAGAAGTGGCGTCGCCGGTGATGGTCGGCGACGGGAGGACTCGTTTCTCGACGGCGGACGGGAAACCCATTTTCCATTTCTTTAACACTTCGACTTTCAGCGAGTACACGGTGGTCCAATCGGCCTGTGTCGTGAAGATTGACTCCGACGCCCCCATGAAGAAGATGGTTTTGCTTGGTTGTTGTCTCTCCACCGGCGTCGGAGCTGCGTGGAACATTGCAAATGTGCAGGCTGGATCGACGGTGGCGGTGTTTGGCTTAGGAGCTGTTGGTCTTGCGGTTGCAGAAGGAGCACGTTCCAGAGGTGCATCTAAAATCATTGGTGTGGATATAAACCCTAATAAATTCATTAAAGGCAAAGCTGTTGGAATTAGTGATTTCATAAATCCACTAGATTCAGCTGGGAAGTCGGTAAATGAGATAATTAAGGAAATGACAGATGGTGGCGTGGATTATAGCTTTGAATGTGCAGGCAATCTTCAAGTTTTGCGTGAAGCTTTCTTGTCCACCCACGAAGGATGGGGAATTCTTATATTGTTGGGAGTCCAGTTGAGCCCAGATCTTCTTCCTATCCACCCAATGGAGCTCTTCTCTGGGCGTACAATTCTTGCTTCACTCTTTGGAGGGTTCAAGGGAAGAACTCAACTTCCTACTTTTGCCAAACAATGTGTGAGTGGATTGGTCAATCTAGATGAGTTTATTACACATGAGCTTCCACTCGAGAACATCAACCAAGCTGTACAGCTTCTCGTCGACGGAGAGTCGATCCGATCCGTCCTACATTTCTGA 1173 48.59 MENQLSNSTTDSTGKVITCKAAVVWGPGEPFVIEQVRVDPPEKMEVRLKILFTSVCHTDLSAWKGQMPESQRAYPIILGHEAVGIVESVGEGVREVKAGDYVIPLFNGECGHCVYCKCEKTNKCVHFGVEVASPVMVGDGRTRFSTADGKPIFHFFNTSTFSEYTVVQSACVVKIDSDAPMKKMVLLGCCLSTGVGAAWNIANVQAGSTVAVFGLGAVGLAVAEGARSRGASKIIGVDINPNKFIKGKAVGISDFINPLDSAGKSVNEIIKEMTDGGVDYSFECAGNLQVLREAFLSTHEGWGILILLGVQLSPDLLPIHPMELFSGRTILASLFGGFKGRTQLPTFAKQCVSGLVNLDEFITHELPLENINQAVQLLVDGESIRSVLHF 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41786114 41816252 + Bma026227.1 Bma07g01033 86170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01033 390 SUPERFAMILY GroES-like 340 390 IPR011032 -
Bma07g01033 390 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 12 389 - -
Bma07g01033 390 Pfam Zinc-binding dehydrogenase 217 337 IPR013149 -
Bma07g01033 390 PANTHER ALCOHOL DEHYDROGENASE 12 389 - -
Bma07g01033 390 Pfam Alcohol dehydrogenase GroES-like domain 45 174 IPR013154 -
Bma07g01033 390 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 79 93 IPR002328 GO:0008270|GO:0016491
Bma07g01033 390 Gene3D - 22 385 - -
Bma07g01033 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 180 354 IPR036291 -
Bma07g01033 390 Gene3D - 194 333 - -
Bma07g01033 390 SUPERFAMILY GroES-like 12 197 IPR011032 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01033 K00001 E1.1.1.1, adh; alcohol dehydrogenase [EC:1.1.1.1] - qsu:112005657 581.252
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00537 Bma07g01033 CCT
Bma05g00537 Bma07g01033 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00875 Bma-Chr1:8226135 Bma07g01033 Bma-Chr7:41786114 2.53E-111 dispersed
Bma05g00197 Bma-Chr5:5452839 Bma07g01033 Bma-Chr7:41786114 7.94E-115 dispersed
Bma05g00537 Bma-Chr5:28732416 Bma07g01033 Bma-Chr7:41786114 8.21E-138 dispersed
Bma07g01033 Bma-Chr7:41786114 Bma15g00757 Bma-Chr15:15622763 3.04E-43 dispersed
Bma07g01033 Bma-Chr7:41786114 Bma06g00315 Bma-Chr6:5280906 2.37E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g254 . . . . Bpe05g00386 . Bma07g01033 . . . Cma02g00945 Cma15g01322 Car02g00694 Car15g01187 . . Cpe05g00768 . . . . . . . . . . . . . . . Cone12ag0581 . . . Csa05g00159 Chy09g01339 . . . . Bda09g00635 Bpe08g00906 . Bma05g00537 . . Cmo02g00954 Cmo15g01385 . . . . . . Bhi12g00080 . . Lac11g1903 Hepe06g1432 . Lcy12g1511 Cla01g00141 Cam01g0146 Cec01g0142 Cco01g0147 Clacu01g0141 Cmu01g0141 Cre09g2365 Lsi09g00132 . . Cme09g01886
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008094 1 1 1 2 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01033 Bma_Chr07 FPKM 8.946191 7.858708 2.1308 2.194351 5.793685 6.902625 5.322967 5.517128 5.015097 4.891287