Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01119 ATGAGGTTACGAAGGAAACTACAACATGAGGAAAGGAGGCAGGGTAATCAGAGAAGGGTACTTACTGATTCGGAAACAGTAAGATGGCTGAATCATGCCGTTGAAAAGATATGGCCCATCTGTATGGAGCATGTAGCTTCACAGAAGATTCTTCTTCCCATCATACCTTGGTTCTTGGACAAGTACAAACCATGGACTGCCAAGAAAGCTCTGGTTCAGCACCTTTACTTGGGAAGAAATCCACCAATTTTCACCGAGATGAGAGTTCTTAGTGAATCATCGGAAGACGACCACTTGGTGCTAGAGTTGGGAATGAATTTTCTCACAGCCGATGACATGAGTGCCATACTTGCTGTAAAGCTAAGAAAACGATTAGGATTTGGAATGTGGGCTCGGCTACATTTAACTGGCATGCACGTCGAAGGGAAGGTCTTGGTTGGCGTAAAATTTCTTCAAACTTGGCCATATATAAGTCGTCTAAGGTTATGTTTTGCCGAGCCTCCTTACTTTCAAATGACCGTGAAGCCTCTCTTTACTCATGGACTTGATGTCACAGTACTTCCGGGGATAGCAGGATGGCTGGATAAGCTTTTGTCCGTTGCGTTTGAGCAGACGCTAGTTGAGCCCAATATGCTGGTTGTCGACATGGAGAAATTTGTTTCCCCAAAACCAGCCGAAAGTTGGTTCTCTGTGGATGTGAAGGAACCAATTGCTTATGCCAAATTGGAAGTAATCGAAGCGACTGATATGAAACCGTCGGATCTAAATGGATTGGCTGATCCTTACATTAAAGGTCAGTTAGGACTCTATAGATTCAAGACTAAGATTCAAAAGAAAACTTTGTCTCCAAAGTGGCATGAGGAATTCAAGATTCCGATAGTTTCGTGGGAGTCAGAAAACTTGCTGAACATTGAAGTTCGGGACAAGGACCATTTCATCGATGATCTTCTTGGAGTCTGTTCAATTAACATCAGCGATAAGCGGGATGGCCAGCGACACGATATGTGGTTGCCTCTCCAAAATGTAAACACCGGGAGATTGCATCTTGTAGTTACGATATTCGAGGAAAATGGAAAGGTTGATGATCAATATAATCACGAGGAAGAAGTGGATGGGGACGACTCGCTGAAGAATTCTTTCAAAAGCGAGACTGCTGATAAGGGTGGTTCGCTATCGTCGGTTTCATCTAGAAAATCTCAAATCGTAGCCGATAATTTTGAGCCCATTGATGTGGAAGGGCAAAAAGAGACTGGAATATGGGTCCATCACCCGGGAAGTGAAATTTTGAAGACTTGGGAGCCTAGAAAGGGAAAGAGTCGGCGACTCGATACTAAAGTTCAGGGGAAGGGTAATCCTTCCATTACAATCACTAATGTAGATGACGACAGTAGTGGAGACGAAAATGCAGAGGAAAAACAGAAAAGGAGATCGTTTCGGAGGGGATTTAGAAGGTTAAGTGCTATTTTCCATAGAAGTCCAAAAAAAGACGAACAATTTGGGAGTTTAGTCGAACCCGTTAGGTCCCCGAGTACGAATGTTCGAGCGGTTAATGCAAAAAGAGGAGGAGGTGTTAAGCTTGTTGTAGAAGAAAAAATTGTTGTAGAAGAGAAACTTATTGTTTCTAGTCTCGATGAGGTTGCAAAAGAAGGAAAATCAAGTAGTGAAAAGAGTGATCAAGAGAGTGCAATTAAGGGTAATGCAAAAGGTAAGAGTAGGAACATTTTCCAACACGTATTTTTGAGAAAAGGGTCGGGTGATTCTCCGGGAAGGAAGGAAAAAGAAGTTTCATCGGATTCTGACTCGTCCGAAGATGATGAAAATACATTATTACCCTTACCACACGGTCCTACCGTTCGAGAGATTTCAAATGTTGCTGAATCTTCGGCCTCTGGGAAGGGGCAAGGGATCGAGTCCAATCCGAGCCAACCGATGGATGATGGGAAATAA 1947 43.25 MRLRRKLQHEERRQGNQRRVLTDSETVRWLNHAVEKIWPICMEHVASQKILLPIIPWFLDKYKPWTAKKALVQHLYLGRNPPIFTEMRVLSESSEDDHLVLELGMNFLTADDMSAILAVKLRKRLGFGMWARLHLTGMHVEGKVLVGVKFLQTWPYISRLRLCFAEPPYFQMTVKPLFTHGLDVTVLPGIAGWLDKLLSVAFEQTLVEPNMLVVDMEKFVSPKPAESWFSVDVKEPIAYAKLEVIEATDMKPSDLNGLADPYIKGQLGLYRFKTKIQKKTLSPKWHEEFKIPIVSWESENLLNIEVRDKDHFIDDLLGVCSINISDKRDGQRHDMWLPLQNVNTGRLHLVVTIFEENGKVDDQYNHEEEVDGDDSLKNSFKSETADKGGSLSSVSSRKSQIVADNFEPIDVEGQKETGIWVHHPGSEILKTWEPRKGKSRRLDTKVQGKGNPSITITNVDDDSSGDENAEEKQKRRSFRRGFRRLSAIFHRSPKKDEQFGSLVEPVRSPSTNVRAVNAKRGGGVKLVVEEKIVVEEKLIVSSLDEVAKEGKSSSEKSDQESAIKGNAKGKSRNIFQHVFLRKGSGDSPGRKEKEVSSDSDSSEDDENTLLPLPHGPTVREISNVAESSASGKGQGIESNPSQPMDDGK 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 44688414 44692273 - Bma026340.1 Bma07g01119 86256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01119 648 MobiDBLite consensus disorder prediction 446 462 - -
Bma07g01119 648 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 599 - -
Bma07g01119 648 MobiDBLite consensus disorder prediction 584 598 - -
Bma07g01119 648 MobiDBLite consensus disorder prediction 367 381 - -
Bma07g01119 648 ProSiteProfiles C2 domain profile. 223 337 IPR000008 -
Bma07g01119 648 MobiDBLite consensus disorder prediction 431 477 - -
Bma07g01119 648 MobiDBLite consensus disorder prediction 431 445 - -
Bma07g01119 648 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 23 217 IPR031468 GO:0008289
Bma07g01119 648 SMART C2_3c 239 336 IPR000008 -
Bma07g01119 648 MobiDBLite consensus disorder prediction 544 648 - -
Bma07g01119 648 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 1 599 - -
Bma07g01119 648 MobiDBLite consensus disorder prediction 382 397 - -
Bma07g01119 648 Pfam C2 domain 241 339 IPR000008 -
Bma07g01119 648 MobiDBLite consensus disorder prediction 544 565 - -
Bma07g01119 648 MobiDBLite consensus disorder prediction 367 397 - -
Bma07g01119 648 Gene3D C2 domain 222 355 IPR035892 -
Bma07g01119 648 MobiDBLite consensus disorder prediction 621 641 - -
Bma07g01119 648 CDD C2 241 339 - -
Bma07g01119 648 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 238 353 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01119 - - - csv:101218944 816.609
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01119 Bma-Chr7:44688414 Bma13g00913 Bma-Chr13:39536206 3.00E-127 dispersed
Bma12g01232 Bma-Chr12:45248292 Bma07g01119 Bma-Chr7:44688414 6.22E-11 dispersed
Bma13g00912 Bma-Chr13:39534550 Bma07g01119 Bma-Chr7:44688414 1.92E-39 transposed
Bma14g00212 Bma-Chr14:2619119 Bma07g01119 Bma-Chr7:44688414 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g874 Blo03g00728 . . . . . . . . . . . . . . . . Bhi09g03594 . . . Hepe01g1487 . . . . . . . . . Cone6ag0227 Cone9ag0260 . . Lsi04g01952 . . . . Blo10g00713 . Bda12g00801 . . Bma07g01119 . . . Cmo09g00683 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004301 1 2 4 3 2 0 2 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01119 Bma_Chr07 FPKM 27.724682 26.343489 12.041586 11.65405 24.625637 20.782389 20.698973 20.010098 19.444105 20.547939