Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01144 ATGGATTCCAAATATCTCAAAGTCGGCGCTCTTGAAAATAGGTTCGATTCCTCTTTCCGTGAACAAAAATGGGTATGCGAAGAACCGACGTATTCTTCGCTAAAAGAGGTAAAATACTCGGAATATAATAACAGTACGATGGACATTTTAGCTGTGTTTTCACTAGCAGCGATGAAGATCATCGGGTTTCAGTACAATTTATTTCTGAACTTTCTCAAATTCCCATTTCGATTGTGTTATTTTTCATTAATGTTGTTGGTCTTCCCGTTTCAAACTCTCAGAGAGATTAGAAGGTGTTTGACAAAATGTCTGTTCAGAATGTGCGGTATAAGTTATAGGTATGTTGTCTCTGTTGCGTTTGGGTACTTGGATGCACAAAGATCGAGAGGAATAAAGATGGGTAAAGCTGCGTTTTGGGCTATGGCCGGCTGTTTCATGCTCTTAGGACTGCTTTTCTCGAGCTTTATCGTCGGAGGTTTTCTGATGAAAATTCTGGTGGAAAATCCGATTCAGATAAAGCAGGCTCTGAATTTTGATTACACTAAACCCAGTCCTGTCGCCTTTGTGCACATTGCGACGTATTCTGCCGGAGTTGGATCGAAAGATGCCATTGAAGCCGAGAATCGAGCAAAAACCCGGATAATTCCGTATAATCGGAAAGTGCAGCTCATTGTTACGTTGACTCTGCCTGAATCGGAGTACAATAGAAAGCTTGGAGTTTTCCAGGTGAGGGTAGAAAGCCTGTCAGCAAATGGAAACGTGACAGCCAGTTCAAGCTATCCATGTATGCTGAAATATAAAAGCAAAACCATATACCAAATTGAAACTTTATTAAAGATTGCTACGCTCATTACTGGGTTACAATCAGAATCACAGATTCTCAACATAAAGACGAGCCACTTCACGGAAGGACTCGACCCTACGACCTCCTTGAAGGTGACCCTTGAACAGCGAGCTGGAATCCCGGCCGGAGCTGGTTTGCCGGAAACCTATGGGGCGTCGATAGGACTCGAGTCCGAGCTTCCTAAATTGAAAAGGGTCATTTGGAATTGGAGAAGAACACTCTTTGTATGGACGAGTTTCATGTTGTTCTTCTTGCAGTTGGTGGTCGTATTGCTGTTCTTTACTCCAATCCTTGTTCCTCAGGTGAGATCGAGTATTTTTAAGAGACGGAAATGTTCTAATTTGAAGATGATGTCTTGGTACAGAAAGGGTTGA 1218 42.36 MDSKYLKVGALENRFDSSFREQKWVCEEPTYSSLKEVKYSEYNNSTMDILAVFSLAAMKIIGFQYNLFLNFLKFPFRLCYFSLMLLVFPFQTLREIRRCLTKCLFRMCGISYRYVVSVAFGYLDAQRSRGIKMGKAAFWAMAGCFMLLGLLFSSFIVGGFLMKILVENPIQIKQALNFDYTKPSPVAFVHIATYSAGVGSKDAIEAENRAKTRIIPYNRKVQLIVTLTLPESEYNRKLGVFQVRVESLSANGNVTASSSYPCMLKYKSKTIYQIETLLKIATLITGLQSESQILNIKTSHFTEGLDPTTSLKVTLEQRAGIPAGAGLPETYGASIGLESELPKLKRVIWNWRRTLFVWTSFMLFFLQLVVVLLFFTPILVPQVRSSIFKRRKCSNLKMMSWYRKG 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45637910 45639225 + Bma026373.1 Bma07g01144 86281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01144 405 PANTHER SEIPIN-3-LIKE 10 391 - -
Bma07g01144 405 PANTHER BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN 10 391 IPR009617 GO:0019915
Bma07g01144 405 Pfam Putative adipose-regulatory protein (Seipin) 150 363 IPR009617 GO:0019915
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01144 K19365 BSCL2; seipin - cit:112498102 360.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01144 Bma-Chr7:45637910 Bma11g00974 Bma-Chr11:43904075 9.38E-93 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g76 . . . . . Bpe08g00985 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma07g01144 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019416 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01144 Bma_Chr07 FPKM 0.797386 2.087178 6.09253 4.143878 7.927098 7.118791 8.397188 5.082368 5.746719 4.065494