Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01155 ATGGCCACATATACTCCCAAGAACATCCTCATTACAGGTGCTGCTGGGTTTATTGCATCCCATGTGGCCAACAGACTCATCCGTAACTATGCCGATTACAACATTGTTGTTCTTGACAAGCTCGATTATTGTTCAAATCTTAAGAATCTCCTTCCCTCCAAGTCATCCCGAAACTTTAAGTTTGTGAAAGGGGATATTGGCAGTGCCGATCTTGTCAATTATCTTTTGATCACTGAATCAATTGACACGATAATGCATTTTGCAGCCCAAACCCATGTCGACAACTCTTTTGGTAATAGTTTTGAGTTCACCAAGAATAATATCTATGGCACACATGTTCTTTTGGAGGCCTGCAAAGTCACTGGACTTGTTAGGAGGTTTATTCATGTGAGCACGGATGAGGTCTATGGGGAGACAGATGAGGATGCCATTGTAGGCAATCATGAGGCTTCTCAACTTCTCCCGACAAATCCATACTCAGCTACAAAGGCCGGAGCTGAAATGCTTGTAATGGCGTATGGTAGGTCTTATGGGCTGCCTGTCATCACAACAAGAGGAAACAATGTTTACGGACCTAATCAATTTCCGGAAAAACTAATTCCAAAGTTCATCCTTTTAGCTATGAGAGGACAGAGTCTTCCGATTCATGGCGATGGTTCTAACGTGAGGAGTTATTTGTACTGTGAAGATGTTGCTGAGGCTTTTGAATTGATTCTCCACAAGGGGGAGGTTGGCCATGTTTACAATATTGGAACTAAGAAGGAGAGGAGGGTTATTGATGTGGCTAAAGATATCTGCAGACTTTTCTCAATGGACCCTGATGCAAGTATCAAGTTTGTGGAAAACAGACCATTCAATGATCAGAGGTACTTTCTCGATGATCAGAAACTTAAGATCTTGGGGTGGTCTGAAAGAACCACCTGGGAAGAGGGATTGAAGAAGACTATTGAATGGTATACAAAAAATCCTGATTGGTGGGGTGATGTTTCTGGAGCTTTGCTTCCTCATCCAAGAATGTTGATGATGCCTGGTGGGATTGAGAGGCATTTCGATGGACAGGAAGAGGAGAAATCTGAATCATATGCCTCGACTAATACCCGAATGGTGGTTCCGCCTTCCAAATCTGTCGGCTCTCCAAGAAAACCATCTCTTAAGTTCTTGATCTATGGTCGGACTGGGTGGATTGGTGGTGTACTTGGAAAGCTGTGTGAGAAACAAGGTATTCCATACGAATACGGAAAAGGGCGACTGGAGGACCGGTCATCGCTCCTGGCAGATATTCGAAATGTGAAGCCAACCCATGTTTTCAATGCTGCCGGTGTGACTGGTAGACCCAATGTTGATTGGTGTGAAACTCACAAAACAGAAACAATTCGGGCTAATGTGGTCGGAACCTTAACATTGGCAGATGTTTGCAGGGAGAATGGGCTCCTTATGGTGAACTTCGCAACAGGATGTATTTTCGAGTATAATTCTACACATCCTGAGGGGTCTGGAATTGGGTTTAAAGAAGAAGACACACCAAATTTCACTGGTTCTTTCTATTCAAAAACCAAAGCCATGGTTGAGGAGCTTTTGAGGGAATACGACAATGTTTGCACCCTACGAGTTAGAATGCCAATATCGTCCGACCTCAACAACCCACGAAACTTCATCACAAAAATTTCTCGCTACAATAAAGTCGTAAACATCCCCAACAGTATGACTATATTAGACGAACTTCTTCCGATCTCGATTGAGATGGCAAAGAGGAACTTGAGGGGCATATGGAACTTCACAAATCCGGGTGTGGTGAGTCATAACGAAATTCTCGAGATGTACAAGAAATACATTGATCCTGAATTCAAATGGGCAAACTTCAGCCTTGAAGAGCAAGCTAAAGTGATAGTTGCCCCAAGAAGCAACAATGAGATGGATGCTTCAAAGTTGAAAAAGGAATTCCCTGAGTTGCTACGAATCAAAGAGTCTCTGATCAAGTATGTCTTTGAACCAAACAAGAAAACCTCAGCCTGA 2013 43.07 MATYTPKNILITGAAGFIASHVANRLIRNYADYNIVVLDKLDYCSNLKNLLPSKSSRNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGLVRRFIHVSTDEVYGETDEDAIVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGQSLPIHGDGSNVRSYLYCEDVAEAFELILHKGEVGHVYNIGTKKERRVIDVAKDICRLFSMDPDASIKFVENRPFNDQRYFLDDQKLKILGWSERTTWEEGLKKTIEWYTKNPDWWGDVSGALLPHPRMLMMPGGIERHFDGQEEEKSESYASTNTRMVVPPSKSVGSPRKPSLKFLIYGRTGWIGGVLGKLCEKQGIPYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCETHKTETIRANVVGTLTLADVCRENGLLMVNFATGCIFEYNSTHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLREYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYIDPEFKWANFSLEEQAKVIVAPRSNNEMDASKLKKEFPELLRIKESLIKYVFEPNKKTSA 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45772026 45774248 - Bma026387.1 Bma07g01155 86292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01155 670 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Bma07g01155 670 PANTHER UDP-GLUCOSE 4,6-DEHYDRATASE 1 667 - -
Bma07g01155 670 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 383 647 IPR036291 -
Bma07g01155 670 MobiDBLite consensus disorder prediction 352 376 - -
Bma07g01155 670 Gene3D - 377 670 - -
Bma07g01155 670 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 332 IPR036291 -
Bma07g01155 670 Gene3D - 9 313 - -
Bma07g01155 670 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 667 - -
Bma07g01155 670 CDD dTDP_HR_like_SDR_e 385 657 - -
Bma07g01155 670 Pfam RmlD substrate binding domain 385 555 IPR029903 -
Bma07g01155 670 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Bma07g01155 670 Gene3D - 200 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01155 K12450 RHM; UDP-glucose 4,6-dehydratase [EC:4.2.1.76] - mnt:21400503 1273.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01155 Bma13g00919 CCT
Bma07g01155 Bma10g00464 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00801 Bma-Chr5:45300713 Bma07g01155 Bma-Chr7:45772026 2.49E-79 dispersed
Bma07g01155 Bma-Chr7:45772026 Bma10g00464 Bma-Chr10:5256232 0 dispersed
Bma01g02421 Bma-Chr1:81848707 Bma07g01155 Bma-Chr7:45772026 7.23E-06 transposed
Bma02g00061 Bma-Chr2:495359 Bma07g01155 Bma-Chr7:45772026 0 transposed
Bma04g00296 Bma-Chr4:2367759 Bma07g01155 Bma-Chr7:45772026 4.46E-07 transposed
Bma14g00268 Bma-Chr14:3154681 Bma07g01155 Bma-Chr7:45772026 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g26 . . . . Bpe09g00271 Bpe08g00995 Bma10g00464 Bma13g00919 . Cmo04g00704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00719 . Bda12g00810 . . Bma07g01155 . . . . Cma04g00655 . . . . Cpe01g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000921 5 5 3 5 5 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 3 2 1 3 2 3 8 2 0 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01155 Bma_Chr07 FPKM 5.594203 8.72509 7.145139 4.645756 8.188551 11.622002 8.09311 17.324074 11.540606 12.874819