Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01161 ATGAAGATTTCTTCCAAATCTATCCTCAGTCCCGGCCATAGCAGAGACTCCTCGCAGGTGTCTCTCTCTACTTCTCTCAGCCGGAGGCTCAGAAACAGCGGCAGCTTGAAGGGAGGTCACGCGTCGCCGATGTTTCCGACTGGAGTGAAGAAAAGAGGGGTTGCTTTTGAGAATCCGGAGCCGTCGTCTCCGAAAGTTACGTGCATAGGACAGATCAGGACGAAGACCAAGAAACAAGGGAAGAAGATGAGGAGCAGATCGAGAAAAATGGCGTCGGAAGCAAGTTTCCGGACAGAGAGTCAGTTTCAGATTCAGAATACTCGACCAGAAGGTTTTCCAGCGCACCGGAATCAGAGGTGGGTGCATCTTCCATTGACGATCTGCGAAGCTTTGCGTGGTTTCGGGACGGAGCTCCGCTGCTTCTTCCCATGTCGTTCGAGCGAGAGGGAGAGAGAAGAGAAAACGGAGAGATCTGGGAAATCGAGCTCCTGCGGAACTGTTTTTGCTAGGTGGTTGGTTTCTGTACAAGACGAAGAAGGAAAGGAGAGAGAGATAGAGCTGGTGGTCGGAGAGGAAGATAATGGTGGTCGGAGGAGGAATGTCTTTGAAGGAATGGAGTTCAAAGAAGGAGACGAGAAGGGTGAGATTGTTGAGGAAGAAGGTGGAAGAGTCAGTATTTGTATACCCCCTAAGAATGCTTTGCTTTTGATGAGATGTAGATCGGATCCAGTGAAAATGGCGGCGCTAGCTAATCGGTTCTGGGAGTCACCCGCTCTGGTAATTGCAGACAATGTAGAGGAAGAAGTTGAAGTAGAAGTAAAGGAACAGTGCGAAACGGAAAGTGCTGCGGTAGACATGGAAAGAGAAGAAGACGCTCTGACTGAAATGGAGATTCGAGATAAAGAAGAAAACTTGATTTTGCAGGAGGAAGAGGATGTGAAAGAGAAAGGAAGTCTATTGAAGGAGGAAGAGGAGAGAGAGGAAGTTGCAATGGAGAAAACAGAGATGGAAGAGACATTGGAGACGAACGAGCCTGGATGTGCAGAAGAAGCTGCTTCACCGGACGAAAGTTTTTCATCGGAAGAAATTTTAGATCCAGAAAAGCTGGAATTTGAAGAAAACGCCGAAAATAGTGAAGAAGAAGAAGGAGATGGGAAACGGAGAGAGCCAGAAGAAAATATCCAGATTTCAGCCATTACAGAAGCTATGGAGGAATCAACAGAAGAAGAACAGAAAGCCACTCAAGAAAGATTCGAATCAGAAGATCCTGAGCCCGCAAAGGAAGAAACGGGTCCGACTAAGGAGGAAGAAGAAGAAAAATCATTAAAGCAAGAGAAACGAAGCTCTGTTTTACCAGATTGCTTACTTTTAATGATGATAAGTGAACCAAAGCTTTCAATGGAGGTCTCGAAAGAGACTTGGGTTTGCAGTACAGACTTCATCAGACGCCCGCCGGAGACGGAGAAGAAGAAGAAAAAGCCGGTAGAAAAAACCAACAGCGGAGAAGAATCAGCTAAGCGTGTCAGCGTAGACAGGAAGTTTGAAAGGAGTAGGCAGCCATTGCTACAGCAGCCTGCGAGGTCTTCTTGCTCCTTGCCAGCGCCGACAGGTCGGGTCGCGGGAGCAACCATTACGACGGCGAAAGATCAGAAGTTAGTGAACGGAAAGGCTTATGAGCCGTTTGTGCTGACGCGGTGCAAGTCGGAGCCGATGAGATCGGCAGCAAAACTAGCGCCGGAGGCTTGTTTCTGGAAAAATGGGAAGCTAGAGCCGCCGCCTCCGGCAACGCTGGGTGTTGGATTTTGA 1806 48.39 MKISSKSILSPGHSRDSSQVSLSTSLSRRLRNSGSLKGGHASPMFPTGVKKRGVAFENPEPSSPKVTCIGQIRTKTKKQGKKMRSRSRKMASEASFRTESQFQIQNTRPEGFPAHRNQRWVHLPLTICEALRGFGTELRCFFPCRSSEREREEKTERSGKSSSCGTVFARWLVSVQDEEGKEREIELVVGEEDNGGRRRNVFEGMEFKEGDEKGEIVEEEGGRVSICIPPKNALLLMRCRSDPVKMAALANRFWESPALVIADNVEEEVEVEVKEQCETESAAVDMEREEDALTEMEIRDKEENLILQEEEDVKEKGSLLKEEEEREEVAMEKTEMEETLETNEPGCAEEAASPDESFSSEEILDPEKLEFEENAENSEEEEGDGKRREPEENIQISAITEAMEESTEEEQKATQERFESEDPEPAKEETGPTKEEEEEKSLKQEKRSSVLPDCLLLMMISEPKLSMEVSKETWVCSTDFIRRPPETEKKKKKPVEKTNSGEESAKRVSVDRKFERSRQPLLQQPARSSCSLPAPTGRVAGATITTAKDQKLVNGKAYEPFVLTRCKSEPMRSAAKLAPEACFWKNGKLEPPPPATLGVGF 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45888406 45890211 - Bma026394.1 Bma07g01161 86298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01161 601 MobiDBLite consensus disorder prediction 309 340 - -
Bma07g01161 601 PANTHER CHLOROPLAST PROTEIN HCF243 1 384 - -
Bma07g01161 601 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 354 601 - -
Bma07g01161 601 MobiDBLite consensus disorder prediction 1 101 - -
Bma07g01161 601 MobiDBLite consensus disorder prediction 482 518 - -
Bma07g01161 601 MobiDBLite consensus disorder prediction 477 535 - -
Bma07g01161 601 MobiDBLite consensus disorder prediction 309 454 - -
Bma07g01161 601 Coils Coil 306 339 - -
Bma07g01161 601 MobiDBLite consensus disorder prediction 405 447 - -
Bma07g01161 601 MobiDBLite consensus disorder prediction 1 32 - -
Bma07g01161 601 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 1 384 - -
Bma07g01161 601 PANTHER CHLOROPLAST PROTEIN HCF243 354 601 - -
Bma07g01161 601 Coils Coil 396 416 - -
Bma07g01161 601 MobiDBLite consensus disorder prediction 380 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01161 - - - qsu:112013406 447.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01917 Bma-Chr1:70587487 Bma07g01161 Bma-Chr7:45888406 8.64E-10 dispersed
Bma04g00614 Bma-Chr4:5860386 Bma07g01161 Bma-Chr7:45888406 1.31E-10 dispersed
Bma07g01161 Bma-Chr7:45888406 Bma10g00488 Bma-Chr10:5742687 5.05E-102 dispersed
Bma07g01161 Bma-Chr7:45888406 Bma04g01640 Bma-Chr4:52310620 1.88E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g160 . . . Bda09g00533 . . . . Cmo16g00440 Cmo04g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00777 . . Bpe01g00452 Bma07g01161 . . . . Cma04g00557 Cma16g00408 Car04g00527 . . Cpe01g00500 . . . . . . . Cla05g00994 Cam05g1085 Cec05g1093 Cco05g1087 Clacu05g1079 Cmu05g1029 Cre05g1103 . . Chy06g01170 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008790 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01161 Bma_Chr07 FPKM 3.565674 4.130283 8.639385 8.247725 8.088849 8.371746 7.539504 21.428209 23.051064 22.152233