Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01163 ATGGAAACTATTTTGCAAGTTCATAATAATACAATGCCATCACGAGAAGTTCTAGTAAGCATTGCGGAGAAGTTCAGTGAGACGGAGGATCGAAAAGGCAAGATTACTGTGCAAATGAAACAAATTTGGAATTGGTTCCAAAATAGGAGATACGCAATTAGGGCAAAATCAAGTAAAGCTCCTGGAAAGTTAAGCGTGTCTCCTTTGCCACGTGATGATTCAACATCAGTGAGAAACGCAACTCAATCTGTAGCTGTGCCTGTGCCTGCTCCTTCAGGTAGAATTAGAAGGAGTTCTGCTGAAACTTCTGTCATGGAGTTCGAGGCAAAATCTGGCAGGGATGGTGCATGGTATGATGTTGCTACGTTTTTGTCCCACAGATATTTGGAGACAGGTGATCCGGAAGCACTTGTCAGATTTGCTGGTTTTGGACCAGAGGAGGATGAATGGATTAACATTAGGAAGCACGTGAGGCCTCGTTCTCTTCCGTGTGAATCATCAGAGTGCGTTGCTGTTATTCCCGGCGATCTAATTCTCTGCTTTCAGGAAGGTAAAGAGCAGGCCCTTTACTTTGATGCTCACGTTCTTGATGCACAAAGGAGGAGGCACGATGTTAGAGGTTGTCGTTGTAGGTTCTTGGTGCGATACGACCATGATCAATCTGAGGAAATTGTGCCACTGAGAAAGGTCTGTCGTCGGCCGGAAACTGATTATCGACTACAGCAGCTCCATGCAGTGAACCAAATGGTCGCTTCCGATCAACAAAAGCCTACCGTTGAAACTACCATGATCAGTGGACCTTCTTCCAACATAATGCAGAAGCATATTGATCACGATGGTGGCGCTGTGGACCCCGTCCCGTGCATGAATGTTCCTGTACCTGTTCAGAATCAAAACTCAGAGCCAAAGATGGCAGAACCCACAAGTGCTCCAGTTCCAATCGATTCAAATAAAATGAGATATTCGAGACTGTATAACTCCATAACCGAACACCCAAGTTTGGGTTTCTGCCCGTTTCTTCTCTACTCAAGAACTGGATTGAAATCGTTCGTCACCAGCTGCAGAGCCGTTGTCTTGCCGCGCTTCGGTGGGCCGGAAGTGCTCGAGCTCCGATCGGATGTCAGCGTCCCCGATCTTAAACCCAATGAAGTTCTTGTCAGGGCTCACGCCGTATCGATCAATCCGCTAGATACCAGAATGCGTTCAGGCTATGGTCGTTCCTTATTTGAACCTCTCCTGCCACTCGTTTTGGGGCGTGATATTAGTGGTGAAGTTGCAGGCATTGGATCTTCGGTAAACACCTTTCGAGTTGGACAAGATGTTTTTGGTGCATTGCATCCAACTGCTGTCAGGGGTACTTATGCTGACTATGCAATTCTTTCTGAAGATGAATTAACTTCAAAACCCGTATCTGTTTCCCATGTGGAGGCCAGCACCATTCCTTTTGCGGCATTGACTGCATGGCGTGGGTTGAAGGGCACTGCTAGAATAACTGAAGGGCAAAGGGTATTAGTAATTGGTGGTGGTGGAGCAGTGGGGTTTGCTGCCATTCAGCTTTCAGTAGCTTCTGGCTGCCTAGTAACAACTACTTGTGGAAGTCAAAGCATAGATCGGGTATTAGCAGCCAATGTTGAGCAGGCCGTTGACTACACTTCTGAGGATATTGAATTGGTCGTAAGGGGGAAATTTGACGCTGTGTTGGATACTATTGGCGGTCCAGAGACAGAAAGAATAGGCATTAATTTCTTAAAGAGAGGTGGATACTATATGACACTTCAGGGTGAAGCTGCATCATTGACCGATAGATATGGCCTTGCCATTGGACTTCCATTGTCAACTACTATTTTGCTGAAGAAACAGATCCAATATCGCTATTCGCACGGAATAGAGTATTGCTGGACTTATATGAGGGCAGATTCCGAAGGTTTAAGTGAAATTGGAAAGCTCTGTGAGGCTGGAAAGCTTAAAATTCCAGTGGAGAAGACATTTCCTCTGTCTCAAGTGAGAGAAGCTCATGAGGCCAAGGACAAGAAACTTGTACCGGGTAAGGTGGTGCTTCAGATCAACTAG 2070 46.04 METILQVHNNTMPSREVLVSIAEKFSETEDRKGKITVQMKQIWNWFQNRRYAIRAKSSKAPGKLSVSPLPRDDSTSVRNATQSVAVPVPAPSGRIRRSSAETSVMEFEAKSGRDGAWYDVATFLSHRYLETGDPEALVRFAGFGPEEDEWINIRKHVRPRSLPCESSECVAVIPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHAVNQMVASDQQKPTVETTMISGPSSNIMQKHIDHDGGAVDPVPCMNVPVPVQNQNSEPKMAEPTSAPVPIDSNKMRYSRLYNSITEHPSLGFCPFLLYSRTGLKSFVTSCRAVVLPRFGGPEVLELRSDVSVPDLKPNEVLVRAHAVSINPLDTRMRSGYGRSLFEPLLPLVLGRDISGEVAGIGSSVNTFRVGQDVFGALHPTAVRGTYADYAILSEDELTSKPVSVSHVEASTIPFAALTAWRGLKGTARITEGQRVLVIGGGGAVGFAAIQLSVASGCLVTTTCGSQSIDRVLAANVEQAVDYTSEDIELVVRGKFDAVLDTIGGPETERIGINFLKRGGYYMTLQGEAASLTDRYGLAIGLPLSTTILLKKQIQYRYSHGIEYCWTYMRADSEGLSEIGKLCEAGKLKIPVEKTFPLSQVREAHEAKDKKLVPGKVVLQIN 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45947807 45961067 - Bma026396.1 Bma07g01163 86300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01163 689 Pfam Alcohol dehydrogenase GroES-like domain 381 443 IPR013154 -
Bma07g01163 689 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 311 IPR039276 -
Bma07g01163 689 ProSiteProfiles 'Homeobox' domain profile. 1 56 IPR001356 GO:0003677
Bma07g01163 689 MobiDBLite consensus disorder prediction 61 80 - -
Bma07g01163 689 Gene3D - 480 658 - -
Bma07g01163 689 CDD MDR_like_2 355 686 - -
Bma07g01163 689 Pfam Zinc-binding dehydrogenase 545 686 - -
Bma07g01163 689 CDD homeodomain 8 54 IPR001356 GO:0003677
Bma07g01163 689 SUPERFAMILY GroES-like 354 509 IPR011032 -
Bma07g01163 689 Pfam SAWADEE domain 105 231 IPR032001 GO:0003682
Bma07g01163 689 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 472 663 IPR036291 -
Bma07g01163 689 Gene3D - 361 686 - -
Bma07g01163 689 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 311 - -
Bma07g01163 689 Gene3D - 164 236 - -
Bma07g01163 689 SUPERFAMILY Homeodomain-like 9 57 IPR009057 -
Bma07g01163 689 Gene3D - 102 163 - -
Bma07g01163 689 SMART PKS_ER_names_mod 363 686 IPR020843 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01163 K23164 RTN4IP1; reticulon-4-interacting protein 1, mitochondrial - mnt:21395398 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01163 Bma-Chr7:45947807 Bma09g00580 Bma-Chr9:42903192 1.95E-32 dispersed
Bma07g01163 Bma-Chr7:45947807 Bma07g01164 Bma-Chr7:46069972 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g158 . . . . . . . . Cmo16g00442 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0174 Cone9ag0199 . . . . . . . . . . . . Bma07g01163 . . . . . Cma16g00410 . Car16g00374 Cpe14g00344 . . . . . . . . Cla05g00993 Cam05g1084 Cec05g1092 Cco05g1086 Clacu05g1078 Cmu05g1028 Cre05g1102 . . Chy06g01171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010183 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01163 Bma_Chr07 FPKM 11.391629 10.537928 100.229286 101.221504 11.014753 12.385969 13.800957 188.261383 192.260635 188.255646