Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01164 ATGGGTCGACCTCCGAATAATGGAGGCCCTGCTTTCCGCTTCACGCCTGCTGAGGTTATGGAGATGGAAACTATTTTGCAAGTTCATAATAATACAATGCCATCACGAGAAGTTCTAGTAAGCATTGCGGAGAAGTTCAGTGAGACGGAGGATCGAAAAGGCAAGATTACTGTGCAAATGAAACAAATTTGGAATTGGTTCCAAAATAGGAGATACGCAATTAGGGCAAAATCAAGTAAAGCTCCTGGAAAGTTAAGCGTGTCTCCTTTGCCACGTGATGATTCAACATCAGTGAGAAACGCAACTCAATCTGTAGCTGTGCCTGTGCCTGCTCCTTCAGGTAGAATTAGTGTAGGAAGGAGTTCTGCTGAAACTTCTGTCATGGAGTTCGAGGCAAAATCTGGCAGGGATGGTGCATGGTATGATGTTGCTACGTTTTTGTCCCACAGATATTTGGAGACAGGTGATCCGGAAGCACTTGTCAGATTTGCTGGTTTTGGACCAGAGGAGGATGAATGGATTAACATTAGGAAGCACGTGAGGCCTCGTTCTCTTCCGTGTGAATCATCAGAGTGCGTTGCTGTTATTCCCGGCGATCTAATTCTCTGCTTTCAGGAAGGTAAAGAGCAGGCCCTTTACTTTGATGCTCACGTTCTTGATGCACAAAGGAGGAGGCACGATGTTAGAGGTTGTCGTTGTAGGTTCTTGGTGCGATACGACCATGATCAATCTGAGGAAATTGTGCCACTGAGAAAGGTCTGTCGTCGGCCGGAAACTGATTATCGACTACAACAGCTCCATGCAGTGAACCAAATGGTCGCATCCGATCAACAAAAGCCTACCGTTGAAACTACCATGATCAGTGGACCTTCTTCCAACATAATGCAGAAGCATATCGATCACGATGGAGGCGCTGTGGACCCCGTCCCGTGCATGAATGTTCCTGTATCTGTTCAGAATCAAAACTCAGAGCCAAAGATGGCAGAACCCACAAGTGCTCCAGCTCCAATCGATTCAAATAAAATGAGATATTCGAGACTGTATAACTCCATAACCGAACACCCAAATTTGGGTTTCCGCCCGTTTCTTCTCTACTCAAGAACTGGATTGAAATCGTTCGTCACCAGCTGCAGAGCCGTTGTCTTGCCGCGCTTCGGTGGGCCGGAAGTGCTCGAGCTCCGACCGGATGTCAGCGTCCCCGATCTTAAACCCAATGAAGTTCTTGTCAGGGCTCACGCCGTATCGATCAATCCGCTAGATACCAGAATGCGTTCAGGCTATGGTCGTTCCTTATTTGAACCTCTCCTGCCGCTCGTTTTGGGGCGTGATATTAGTGGTGAAGTTGCAGGCATTGGATCTTCGGTAAACACCTTTCGAGTTGGACAAGATGTTTTTGGTGCATTGCATCCAACTGCTGTCAGGGGTACTTATGCTGACTATGCAATTCTTTCTGAAGATGAATTAACTTCAAAACCCGTATCTGTTTCCCATGTGGAGGCCAGCACCATTCCTTTTGCGGCATTGACTGCATGGCGTGGGTTGAAGGGCACTGCTAGAATAACTGAAGGGCAAAGGGTATTAGTCATTGGTGGTGGTGGAGCAGTGGGGTTTGCTGCCATTCAGCTTTCAGTAGCTTCTGGCTGCCAAGTAACAACTACTTGTGGAAGTCAAAGCATAGATCGTGTATTAGCAGCCAATGTTGAGCAGGCCGTTGACTACACTTCTGAGGATATTGAATTGGTCATAAGGGGGAAATTTGACGCTGTGTTGGATACTATTGGCGGTCCAGAGACAGAAAGAATAGGCATTAATTTCTTAAAGAGAGGTGGATACTATATGACACTTCAGGGTGAAGCTGCATCATTGACTGATAGATATGGCCTTGCCATTGGACTTCCATTGTCAACTACTATTTTGCTGAAGAAACAGATCCAATATCGCTATTCGCACGGAATAGAGTATTGCTGGACTTATATGAGGGCAGATTCAGAAGGTTTAAGTGAAATTGGAAAGCTCTGTGAGGCTGGAAAGCTTAAAATTCCAGTGGAGAAGACATTTCCTCTGTCTCAAGTGAGAGAAGCTCATGAGGCCAAGGACAAGAAACTTGTACCGGGTAAGGTGGTGCTTCAGATCGTCTAG 2139 46.38 MGRPPNNGGPAFRFTPAEVMEMETILQVHNNTMPSREVLVSIAEKFSETEDRKGKITVQMKQIWNWFQNRRYAIRAKSSKAPGKLSVSPLPRDDSTSVRNATQSVAVPVPAPSGRISVGRSSAETSVMEFEAKSGRDGAWYDVATFLSHRYLETGDPEALVRFAGFGPEEDEWINIRKHVRPRSLPCESSECVAVIPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHAVNQMVASDQQKPTVETTMISGPSSNIMQKHIDHDGGAVDPVPCMNVPVSVQNQNSEPKMAEPTSAPAPIDSNKMRYSRLYNSITEHPNLGFRPFLLYSRTGLKSFVTSCRAVVLPRFGGPEVLELRPDVSVPDLKPNEVLVRAHAVSINPLDTRMRSGYGRSLFEPLLPLVLGRDISGEVAGIGSSVNTFRVGQDVFGALHPTAVRGTYADYAILSEDELTSKPVSVSHVEASTIPFAALTAWRGLKGTARITEGQRVLVIGGGGAVGFAAIQLSVASGCQVTTTCGSQSIDRVLAANVEQAVDYTSEDIELVIRGKFDAVLDTIGGPETERIGINFLKRGGYYMTLQGEAASLTDRYGLAIGLPLSTTILLKKQIQYRYSHGIEYCWTYMRADSEGLSEIGKLCEAGKLKIPVEKTFPLSQVREAHEAKDKKLVPGKVVLQIV 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46069972 46080402 - Bma026399.1 Bma07g01164 86301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01164 712 CDD homeodomain 13 75 IPR001356 GO:0003677
Bma07g01164 712 Gene3D - 384 709 - -
Bma07g01164 712 Gene3D - 3 75 - -
Bma07g01164 712 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 334 - -
Bma07g01164 712 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 334 IPR039276 -
Bma07g01164 712 SUPERFAMILY GroES-like 377 532 IPR011032 -
Bma07g01164 712 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 495 686 IPR036291 -
Bma07g01164 712 Pfam Zinc-binding dehydrogenase 568 709 - -
Bma07g01164 712 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Bma07g01164 712 SMART HOX_1 7 81 IPR001356 GO:0003677
Bma07g01164 712 Gene3D - 125 186 - -
Bma07g01164 712 SUPERFAMILY Homeodomain-like 4 77 IPR009057 -
Bma07g01164 712 SMART PKS_ER_names_mod 386 709 IPR020843 GO:0016491
Bma07g01164 712 CDD MDR_like_2 378 709 - -
Bma07g01164 712 Gene3D - 503 681 - -
Bma07g01164 712 Pfam Alcohol dehydrogenase GroES-like domain 404 466 IPR013154 -
Bma07g01164 712 Pfam SAWADEE domain 128 254 IPR032001 GO:0003682
Bma07g01164 712 Gene3D - 187 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01164 K23164 RTN4IP1; reticulon-4-interacting protein 1, mitochondrial - mnt:21395398 568.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02562 Bma-Chr1:83273411 Bma07g01164 Bma-Chr7:46069972 7.34E-40 dispersed
Bma04g00414 Bma-Chr4:3347964 Bma07g01164 Bma-Chr7:46069972 7.12E-62 dispersed
Bma07g01164 Bma-Chr7:46069972 Bma09g00580 Bma-Chr9:42903192 1.08E-32 dispersed
Bma07g01163 Bma-Chr7:45947807 Bma07g01164 Bma-Chr7:46069972 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g157 . . . . . Bpe08g01000 . . Cmo16g00443 Cmo04g00593 . . . Car09g00555 . Cpe06g00484 . . . . . . . . . . . . . . . Cone6ag0175 Cone9ag0200 Cone14ag1044 Cone15ag1033 . . . . . . . . . . Bma07g01164 . . . Cmo09g00611 Cma04g00558 Cma16g00411 Car04g00528 Car16g00375 Cpe14g00345 Cpe01g00501 . . . . . . . Cla05g00992 Cam05g1083 Cec05g1091 Cco05g1085 Clacu05g1077 Cmu05g1027 Cre05g1101 . . Chy06g01172 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010183 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57654 PF13602 ADH_zinc_N_2 6.10E-18 CL0063 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01164 Bma_Chr07 FPKM 22.613653 25.403616 23.514233 22.500635 35.122223 42.214642 37.379387 26.61978 27.424135 29.821552