Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01166 ATGGCAAAGATGAAAGAGCGGAAGGTGAACATATCCGGAAAGCCGAAGCATTCACTTGACGTTAACCGAAAAGATGGGGACAAGGATTCTCGCAGCGCCGCTACGGTACGTCGTCTTAAGATGTATAATACGAGGCCGAAGCGCGATCGTAAAGGAAAGATTTTGAGAAATGAGTACCAATCGAAAGAGTTGCCCTGCACGCGGATCCAACCTGATCGCCGCTGGTTCGGGAACACTCGAGTTGTAAACCAGAAGGAGCTTGAAATTTTCCGAGACGAGCTTCAGAATCGGATGTCCAGCCAATATAATGTCATTTTGAAGGAGAAAAAGTTGCCTTTGTCCCTCTTGAATGACCATCAGAAGCAATCCAGAGTTCATCTTCTGGATACTGAGCCATTTGAGGATGCATTTGGACCAAAGAGGAAGAGGAAGCGTGCAAAGCTTTTGGCTGCTGATTATGAGGCATTACTTAAAAAAGCTGACGGTTGCCAAGATGCCTTTGAGGAGAAGCATGCTGCTAATGAAACTGTTGAAGAAAATGAAGCTGATGGCTTTAAGGACCTTGTTCGACATACAATGTTTGAAAAGGGTCAAAGTAAGCGGATATGGGGTGAGCTCTACAAAGTTATAGACTCATCTGATGTTGTTATCCAGGTTTTGGATGCAAGAGATCCACAAGGAACGAGATGTTACCATTTAGAGAAGCATCTGAAAGAGCATTGCAAGCACAAACACATGGTTCTTCTGTTGAATAAATGTGATTTAATTCCAGCATGGGCAACAAAAGGCTGGCTCAGAGTATTGTCCAAAGAATATCCTGCTCTAGCATTTCATGCAAGCATCAACAAGTCTTTTGGAAAGGGCTCTCTTCTATCGGTGCTTAGACAATTTGCTCGCCTCAAAAGTGATAAGCAAGCAATTTCAGTGGGATTTATTGGGTATCCCAATGTTGGAAAGTCATCTGTTATTAACACACTGAGGACCAAAAATGTAACGTTACTTCTATTTCTCTTATGTTTTCTTATGAATTTTTTTTTTTTTTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTGGGCATTATTCCCAACAATAA 1173 38.28 MAKMKERKVNISGKPKHSLDVNRKDGDKDSRSAATVRRLKMYNTRPKRDRKGKILRNEYQSKELPCTRIQPDRRWFGNTRVVNQKELEIFRDELQNRMSSQYNVILKEKKLPLSLLNDHQKQSRVHLLDTEPFEDAFGPKRKRKRAKLLAADYEALLKKADGCQDAFEEKHAANETVEENEADGFKDLVRHTMFEKGQSKRIWGELYKVIDSSDVVIQVLDARDPQGTRCYHLEKHLKEHCKHKHMVLLLNKCDLIPAWATKGWLRVLSKEYPALAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVTLLLFLLCFLMNFFFFFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGHYSQQ 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46172858 46175506 - Bma026403.1 Bma07g01166 86303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01166 390 MobiDBLite consensus disorder prediction 1 35 - -
Bma07g01166 390 Gene3D - 193 334 IPR027417 -
Bma07g01166 390 Pfam 50S ribosome-binding GTPase 309 329 IPR006073 GO:0005525
Bma07g01166 390 Pfam NGP1NT (NUC091) domain 41 164 IPR012971 -
Bma07g01166 390 Coils Coil 349 349 - -
Bma07g01166 390 PANTHER GTP-BINDING PROTEIN-RELATED 7 331 - -
Bma07g01166 390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 331 IPR027417 -
Bma07g01166 390 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 2 7 331 IPR024929 GO:0005730
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01166 K14537 NUG2, GNL2; nuclear GTP-binding protein - vvi:100246891 583.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01166 Bma-Chr7:46172858 Bma07g01183 Bma-Chr7:46337172 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g108 . . . . . Bpe08g00983 . . . . . Cma09g00823 . Car09g00741 . . . Bhi09g03516 . . . . . . Cla11g01708 Cam11g1776 Cec11g1797 Cco11g1802 Clacu11g1935 Cmu11g1746 Cre11g2154 Cone6ag0196 . . . Lsi04g02010 Csa04g02283 Chy07g00020 Cme07g00534 . . . . . . Bma07g01166 . . . Cmo09g00818 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006194 1 2 1 2 0 1 1 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 2 1 5 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01166 Bma_Chr07 FPKM 32.315281 34.647041 14.847202 15.232277 7.053807 7.701613 6.894438 0.585522 0.298234 0.0