Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01180 ATGGAGGAGGAGCCTGTCCGGAGTGTTATCTATGAAACTCTCAGCCCTCTTTCTCTGGCCGCCTTTAGCACTCCGGCGACGCTGCGTGATTCTTCGCCGTCCGATGATACGTTCGAGCCGTACTCCGTCTTCCGGAACGAGATCTCTCTTTCCACCGCCGACGCGTCTTCGGCCGCGACCGCTGCGCCTGATTTCTTCTCCCTGGACGCTGGTTCTGAGAAGCGTGATGAAATTTTAGATTTTTCTAGTAAGCGGCAAGCTTCGGAAGGAGTTCCGCAAACGCTGGCGCGGGAGGTTGAGCCGAAGCTTGAGAGTGGGTGGTTCCGCGGCAATAATAGATTTAAGAGCCCTATGCTTCAGCTGCATAAAGAAATAGTTGATTTCTGTGACTTTCTTTCTCCAACTCCAGAAGAGAAAACTGCGCGTAACACAGCTATAGAAAGGGTATTTGATGTTGTCAAACATATATGGCCTCTTTGTAATGTTGAAGTTTTTGGATCTTTCAGTACTGGGCTTTATCTTCCTACTAGTGATATTGATGTTGTCATTCTAGGATCAGGAATTCCAACTCCACAGCTTGGTCTGCGAGCACTTTCTAGGGCTTTATCACGAAGTGGAGTGGCCACGAAGATTCAGGTGATTGGAAAGGCTCGTGTCCCGATTATTAAATTTGTAGAGACAAAAAGTGATTTTTCCTTTGACATAAGTTTTGATGTGCAAAATGGACCCAAGGCCACTGACTTTATAAAGAATGCAATGGCGAAATGGCCTCCGTTACGACCATTATGTTTGATCTTGAAAGTATTTTTGCAGCAAAGAGAGCTTAATGAGGTGTACTCTGGTGGACTAGGGTCTTATGCACTTCTTACCATGATTCTAGCAATGTTGCAGGTTGGTAGTTTAAACTCTACTTTGCTCACACAGTATGTACACTTCTTTGATTTTTATGGACGCAAATTGAACGCGAATGATGTTGGTGTAACTTGCAGTGGGACTCATGCTTTTTTCGCAAAGACTAGCAGAGGGTTTGAGGTTAAAGGCCGACCATCGCTTATCTCTATTGAGGATCCACAGACACCAGACAATGACATTGGGAAGAATTCCTTCAACTATTTTCAGAGATATATGGCTGATATTGGAAAAGCATGGCCTGTGTTGATTGTTTGTGGAGGAATTTTGCCGCTATTTTTGGCTGTGATATGGCTGCTCATGATTCGGCATTTTGTTACCACTATGCCTTGGATAACTGTAGCCCTATTTAACATCCTTATTATATCAGTCACAATGTTCTACTATCTTAAAGCTGGATGGATTGGGAATGATGCCGTTTCCCCCATTATTGGTGAGCACGATCCTTATATCCACGTGTTCGGAAGGGAGCTAACTCATCTCCGTGCGGTCACTGTTTTTATGACAATTATAATGATCGTTGCAGCGAAGGTCATTGGAGAAGTTCATGCGCTCATAATTTTTCCGATCATACCATATGCAATCCTTGCAATTTTTTACATGTTTTGGATTTCAGCTGCTCTAAATCTCTTTAGTTCGGGCCAGGTTGTCCAGAATAACTGCAATTCCAACTGTTGTGCTTATGATCTTGCCTCCAAACGGCTCAACTGCGATCGATGCTGTGGTTATAGAATTCATTACACTCCTCATATTGGATTTGCTATTCTCTTCCACCTGTTTGGTTGTTATTGGACAACTCAGTTCTTCATAGCGTGTTCTTCCACTGTGATAGCTGGCTCTGTAGCCTCCTATTATTGGGCTCGGGGAGAAACTTCGCCTGAGATTCCTTTCCTTCCCGTCTTTTCATCAATGAGACGGCTAGCAAGATATAGCCTAGGGTCTATGGCGCTTGGCTCGTTGGTCGTCACATTTGTTGAATCAATCCGTTTCATGCTCGAGTCTATTCGCCGTAGACTGAAAGTCGTCAACACAACCCCCGGTAGCTGGATCGGGAAGGTGGCATTTCATTCTTCTCAGTTTTGCCTGAAAAGTGTCGAGTGGACCATCAAGTCCGTGAATCGAAATGCTTATATTATGATAGCCATAACAGGGAAGAGTTTTTGCAAGGCTTCCGCCATAGCGACAGAGTTGATCATGAATAATATACTCCGGATCGGGCGGGTGAATGTTATTGGGGACGTGATTCTATTCCTCGGAAAATTATGTGTCAGCCTTTCAAGTGCTGTTTTTGCTTTTATCATGTTGGATAACCACAAATACAAATCCGCCCACGACAAGATCTCTTCTCCACTCTTCCCTGTCCTGGTGTGTTGGGGTCTAGGCTACGTAGTGGCGACACTCTTCTTCGGGGTGGTGGAGATGTCGATAGACACCATAATACTCTCATTTTGCCAAGATTCGGAGGAACACGACGGGACTGCCCAGTACGCTTCTCCGCTTCTTATCCAGACTTTGAGTGACCAAAACGAGATGCAAAGACTCACTCAAGGACCTCCCCATTGA 2472 44.98 MEEEPVRSVIYETLSPLSLAAFSTPATLRDSSPSDDTFEPYSVFRNEISLSTADASSAATAAPDFFSLDAGSEKRDEILDFSSKRQASEGVPQTLAREVEPKLESGWFRGNNRFKSPMLQLHKEIVDFCDFLSPTPEEKTARNTAIERVFDVVKHIWPLCNVEVFGSFSTGLYLPTSDIDVVILGSGIPTPQLGLRALSRALSRSGVATKIQVIGKARVPIIKFVETKSDFSFDISFDVQNGPKATDFIKNAMAKWPPLRPLCLILKVFLQQRELNEVYSGGLGSYALLTMILAMLQVGSLNSTLLTQYVHFFDFYGRKLNANDVGVTCSGTHAFFAKTSRGFEVKGRPSLISIEDPQTPDNDIGKNSFNYFQRYMADIGKAWPVLIVCGGILPLFLAVIWLLMIRHFVTTMPWITVALFNILIISVTMFYYLKAGWIGNDAVSPIIGEHDPYIHVFGRELTHLRAVTVFMTIIMIVAAKVIGEVHALIIFPIIPYAILAIFYMFWISAALNLFSSGQVVQNNCNSNCCAYDLASKRLNCDRCCGYRIHYTPHIGFAILFHLFGCYWTTQFFIACSSTVIAGSVASYYWARGETSPEIPFLPVFSSMRRLARYSLGSMALGSLVVTFVESIRFMLESIRRRLKVVNTTPGSWIGKVAFHSSQFCLKSVEWTIKSVNRNAYIMIAITGKSFCKASAIATELIMNNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFIMLDNHKYKSAHDKISSPLFPVLVCWGLGYVVATLFFGVVEMSIDTIILSFCQDSEEHDGTAQYASPLLIQTLSDQNEMQRLTQGPPH 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46315577 46326237 + Bma026421.1 Bma07g01180 86317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01180 823 Gene3D - 116 371 - -
Bma07g01180 823 Gene3D Beta Polymerase, domain 2 134 242 IPR043519 -
Bma07g01180 823 CDD NT_PAP_TUTase 141 250 - -
Bma07g01180 823 Pfam Cid1 family poly A polymerase 310 362 IPR002058 -
Bma07g01180 823 Pfam Plasma-membrane choline transporter 470 791 IPR007603 GO:0022857|GO:0055085
Bma07g01180 823 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 371 819 - -
Bma07g01180 823 Pfam Nucleotidyltransferase domain 147 232 IPR002934 GO:0016779
Bma07g01180 823 SUPERFAMILY PAP/OAS1 substrate-binding domain 257 373 - -
Bma07g01180 823 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 371 819 IPR007603 GO:0022857|GO:0055085
Bma07g01180 823 SUPERFAMILY Nucleotidyltransferase 115 250 IPR043519 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01180 K15377 SLC44A2_4_5; solute carrier family 44 (choline transporter-like protein), member 2/4/5 - qsu:112018455 791.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01387 Bma-Chr6:50635184 Bma07g01180 Bma-Chr7:46315577 6.21E-14 dispersed
Bma07g01180 Bma-Chr7:46315577 Bma12g00926 Bma-Chr12:40909558 6.48E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g231 . Blo03g01544 . Bda09g00502 . Bpe08g01027 . . . . . Cma09g00871 . Car09g00783 Sed07g2511 Cpe06g00694 . Bhi09g03406 Tan01g4404 Cmetu07g1473 . Hepe01g1380 Mch11g1076 . Cla11g01768 Cam11g1834 Cec11g1855 Cco11g1862 Clacu11g1995 Cmu11g1804 Cre11g2212 Cone6ag0140 . . . Lsi04g01330 Csa04g02350 Chy07g00083 . . . . . . . Bma07g01180 . . . Cmo09g00859 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006813 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01180 Bma_Chr07 FPKM 1.299841 1.870258 2.296297 2.185779 2.867469 1.135003 1.386817 2.569117 1.682323 2.036144