Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01183 ATGGCAAAGATGAAAGAGCGGAAGGTGAACATATCCGGAAAGCCGAAGCATTCGCTTGACGTTAACCGAAAAGATGGGGACAAGGATTCTCGCAGCGCCGCTACGGTACGTCGGCTTAAGATGTATAATACGAGGCCGAAGCGCGATCGTAAAGGAAAGATTTTGAGAAATGAGTACCAATCGAAAGAGTTGCCCTGCACGCGGATCCAACCTGATCGCCGCTGGTTCGGGAACACTAGAGTTGTAAACCAGAAGGAGCTTGAAATTTTCCGAGACGAGCTTCAGAATCGGATGTCCAGTCAATATAATGTCATTTTGAAGGAGAAAAAGTTGCCTTTGTCCCTCTTGAATGACCATCAGAAGCAATCCAGAGTTCATCTTCTGGATACTGAGCCATTTGAGGATGCATTTGGACCAAAGAGGAAGAGGAAGCGTGCAAAGCTCTTGGCTGCTGATTATGAGGCATTACTTAAAAAAGCTGACGGTTGCCAAGATGCCTTTGAGGAGAAGCATGCTGCTAATGAAACTGTTGAAGAAAATGAAGCTGATGGCTTTAAGGCCCTTGTTCGACATACAATGTTTGAAAAGGGTCAAAGTAAGCGGATATGGGGTGAGCTCTACAAAGTTATAGACTCATCTGATGTTGTTATCCAGGTTTTGGATGCAAGAGATCCACAAGGAACTAGATGTTACCATTTAGAGAAGCATCTGAAAGAGCATTGCAAGCACAAACACATGGTTCTTTTGTTGAATAAGTGTGATTTAATTCCAGCATGGGCAACAAAAGGATGGCTCAGAGTATTGTCCAAAGAATATCCTGCTCTAGCATTTCATGCAAGCATCAACAAGTCTTTTGGAAAGGGCTCTCTTCTATCGGTGCTTAGACAATTTGCTCGCCTCAAAAGTGATAAGCAAGCAATTTCAGTGGGATTTATTGGGTATCCCAATGTTGGAAAGTCATCTGTTATTAACACACTGAGGACGAAAAATGTTTGCAAGGTTGCTCCCATACCAGGAGAGACGAAAGTGTGGCAGTATATAACTCTTACAAAGAGGATATTTTTAATTGATTGCCCTGGAGTTGTTTACCAGAACAAAGACACGGAAACAGATATTGTGCTAAAGGGCGTGGTACGTGTCACAAATTTGGCGGATGCTTCGGAACACATCGGAGAAGTCTTGAAACGTGTGAAGAAAGAGCACCTTGAAAGAGCCTACAGAATTAAAGAATGGAAGGACGACAATGATTTCTTAGTTCAGCTCTGCAAATTCACAGGCAAATTGCTGAAGGGCGGCGAACCTGACTTGACCACCGCTGCAAAAATGGTCCTTCACGACTGGCAAAGGGGTAGGATACCATTTTTCGTCCCACCTCCTCGAGTCGAAGACTCGGCAGAGGAGCCAAATAATTATGGTTTAGACAAAGACTCGGCAGAAAATAACGAGAAGGCTTCTTCAGCTTTTAAAGCCATTGCCAGTGTGATCTCATCTCAGCAGCAAAAAAGTGTCCCCGTCCAAAGAGATCTATTCACTGAAAATGAGTTAAAGGGCGAGTCATTTGACCCTAATCCAGCCACTGTCAATGAAACCAATAAGCAGCTTCCGGTAACTGATAAAGAGTCGCCGGAGCAGTCATCGGACAACGAGGATGAAGCGTCTGAGAGTCAGTGA 1671 44.23 MAKMKERKVNISGKPKHSLDVNRKDGDKDSRSAATVRRLKMYNTRPKRDRKGKILRNEYQSKELPCTRIQPDRRWFGNTRVVNQKELEIFRDELQNRMSSQYNVILKEKKLPLSLLNDHQKQSRVHLLDTEPFEDAFGPKRKRKRAKLLAADYEALLKKADGCQDAFEEKHAANETVEENEADGFKALVRHTMFEKGQSKRIWGELYKVIDSSDVVIQVLDARDPQGTRCYHLEKHLKEHCKHKHMVLLLNKCDLIPAWATKGWLRVLSKEYPALAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKDTETDIVLKGVVRVTNLADASEHIGEVLKRVKKEHLERAYRIKEWKDDNDFLVQLCKFTGKLLKGGEPDLTTAAKMVLHDWQRGRIPFFVPPPRVEDSAEEPNNYGLDKDSAENNEKASSAFKAIASVISSQQQKSVPVQRDLFTENELKGESFDPNPATVNETNKQLPVTDKESPEQSSDNEDEASESQ 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46337172 46341438 - Bma026424.1 Bma07g01183 86320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01183 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 436 IPR027417 -
Bma07g01183 556 MobiDBLite consensus disorder prediction 1 35 - -
Bma07g01183 556 PANTHER GTP-BINDING PROTEIN-RELATED 7 552 - -
Bma07g01183 556 MobiDBLite consensus disorder prediction 467 482 - -
Bma07g01183 556 Pfam NGP1NT (NUC091) domain 41 164 IPR012971 -
Bma07g01183 556 MobiDBLite consensus disorder prediction 455 482 - -
Bma07g01183 556 CDD NGP_1 205 361 - -
Bma07g01183 556 MobiDBLite consensus disorder prediction 496 556 - -
Bma07g01183 556 Pfam 50S ribosome-binding GTPase 309 387 IPR006073 GO:0005525
Bma07g01183 556 PRINTS GTP1/OBG GTP-binding protein family signature 309 329 IPR006073 GO:0005525
Bma07g01183 556 PRINTS GTP1/OBG GTP-binding protein family signature 355 370 IPR006073 GO:0005525
Bma07g01183 556 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 203 364 IPR030378 GO:0005525
Bma07g01183 556 MobiDBLite consensus disorder prediction 523 541 - -
Bma07g01183 556 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 2 7 552 IPR024929 GO:0005730
Bma07g01183 556 Gene3D - 364 456 IPR023179 -
Bma07g01183 556 Gene3D - 193 363 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01183 K14537 NUG2, GNL2; nuclear GTP-binding protein - jre:108992948 917.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00257 Bma-Chr7:3207311 Bma07g01183 Bma-Chr7:46337172 2.71E-07 dispersed
Bma07g01166 Bma-Chr7:46172858 Bma07g01183 Bma-Chr7:46337172 0 dispersed
Bma07g01183 Bma-Chr7:46337172 Bma13g00550 Bma-Chr13:11635116 5.12E-63 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g247 . Blo03g01541 . Bda09g00500 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0136 Cone9ag0161 . . . . . . . . . . . . Bma07g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006194 1 2 1 2 0 1 1 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 2 1 5 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01183 Bma_Chr07 FPKM 53.547298 55.469173 245.793823 239.689896 29.400425 33.0457 33.60976 62.091801 59.554058 57.559055