Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01184 ATGGCCGATCGGATTTGGTTGCATTCGCTAGAGGACCTACCTTCGCATTTGATTTTAGAGATTCTAACATCTGGTCGGCTTTGTTCTGGCGATCTTGCTTGTTTAGAGCTGACGTCCAGGTTATTTGGGGGTAGCCACGGGTTTATGTATCCTCACAAGTTTAGGTCCTTGGTCGATTTCGCTGCATTTCAGCTCTCTATAACTCATCCTCTCTATGCTCGAAAGGGAGGAAATTCTCAGAGGGAGCTCTTTGATCGGTGCAGCGGCAATTGGAAGAGGGTTTTGAGGTTCTTGCAAGCAGTGGAGCAATGTTCTAACGTCGTGGAGACCTCAGCAGGCAAGCAGATGCAGATTGCAACAGGAAGATACCATACTTTGCTGATTAGGAACTCGTCTGTGTATTCATGCGGTTCCAGCTTATGTGGTGTCCTTGGTCATGGTTCTGAGACAACACAGTGTGTCGCATTCACTCGTATTAATTTTCCATCTCTTGTCCCTGTGGTTCAAGTCTCAGCCTCCCACAATCATGCTGCTTTTGTCATGCAGTCGGGAGAGGTATTCACTTGTGGAGATAATTCTTCATTTTGTTGTGGGCACAGAGATACTAGCCGCCCTATTTTTAGGCCTAGATTAGTGGAAGTATTGAAAGGAATTCCTTGCAAGCAGGTGGCTACAGGGCATAATTTCACAGTTTTCCTAACCAGACAAGGTCTCGTGTACACATGTGGGACAAACACGCAGGGTCAGCTCGGCCACGGCGACACCCTAGATAGACCTGCACCGAAAGTGGTTGAACTTCTTGAGGGAGTTGGTTCCACAGCTCAGATTGCTGCCGGTCCAAGTTATGTATTGGCAGTAACAGATAGTGGAGCATTGTACTCTTTCGGGTCAGGATCTAATTTCTGTCTCGGCCATGGAGAGCAGCATAACGAGCTCCTACCCCGTGCAATTCAAGCATTTCAAAGAAGGGATATTCTTGTAGTTTCTGTCTCTGCTGGTGATGAACATGCAGTGGCATTAGATTCCAATGGATTCGTATATACATGGGGAAAAGGTTACTGTGGAGCTTTGGGTCATGGTGATGAGAATGATAAGACCATTCCATGTCTCTTGAATAGCCTTAAGAGCCATCTTGTTGTCCAGGTCTGTGCAAGAAAGAGAAAAACATTTGTTTTGCTCGATACTGGTGTAGTTTATGGATTTGGGTGGATGGGATTCGGCAGCCTCGGATTCCCCGAACGTGGAATATCCGATAAAGTCACCCGCCCTCAAAGCCTCAATAGCTTGAGATGCCACAAAGTTTCGCAAATCAGCACCGGCTTGTACCACACGGTGGCTATTACTAATGAGGGGAAAATCCTCGGCTTCGGAGATAACGAGAGAGCACAGCTTGGCCACGACTCACTCAGAGGAAGCCTCCAGCCAACACAAATCTTCCTCCAATAG 1446 47.23 MADRIWLHSLEDLPSHLILEILTSGRLCSGDLACLELTSRLFGGSHGFMYPHKFRSLVDFAAFQLSITHPLYARKGGNSQRELFDRCSGNWKRVLRFLQAVEQCSNVVETSAGKQMQIATGRYHTLLIRNSSVYSCGSSLCGVLGHGSETTQCVAFTRINFPSLVPVVQVSASHNHAAFVMQSGEVFTCGDNSSFCCGHRDTSRPIFRPRLVEVLKGIPCKQVATGHNFTVFLTRQGLVYTCGTNTQGQLGHGDTLDRPAPKVVELLEGVGSTAQIAAGPSYVLAVTDSGALYSFGSGSNFCLGHGEQHNELLPRAIQAFQRRDILVVSVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDENDKTIPCLLNSLKSHLVVQVCARKRKTFVLLDTGVVYGFGWMGFGSLGFPERGISDKVTRPQSLNSLRCHKVSQISTGLYHTVAITNEGKILGFGDNERAQLGHDSLRGSLQPTQIFLQ 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46343003 46345999 - Bma026425.1 Bma07g01184 86321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01184 481 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 184 236 IPR000408 -
Bma07g01184 481 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 344 395 IPR000408 -
Bma07g01184 481 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 330 340 IPR000408 -
Bma07g01184 481 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 437 447 IPR000408 -
Bma07g01184 481 SUPERFAMILY RCC1/BLIP-II 407 478 IPR009091 -
Bma07g01184 481 PANTHER BNAA01G28890D PROTEIN 9 480 - -
Bma07g01184 481 Pfam Regulator of chromosome condensation (RCC1) repeat 434 462 - -
Bma07g01184 481 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 290 343 IPR000408 -
Bma07g01184 481 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 131 183 IPR000408 -
Bma07g01184 481 PRINTS Chromosome condensation regulator RCC1 signature 437 453 IPR000408 -
Bma07g01184 481 PRINTS Chromosome condensation regulator RCC1 signature 327 340 IPR000408 -
Bma07g01184 481 PRINTS Chromosome condensation regulator RCC1 signature 346 362 IPR000408 -
Bma07g01184 481 PRINTS Chromosome condensation regulator RCC1 signature 291 307 IPR000408 -
Bma07g01184 481 PRINTS Chromosome condensation regulator RCC1 signature 453 467 IPR000408 -
Bma07g01184 481 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 237 289 IPR000408 -
Bma07g01184 481 Gene3D - 272 481 IPR009091 -
Bma07g01184 481 Gene3D - 90 271 IPR009091 -
Bma07g01184 481 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 396 450 IPR000408 -
Bma07g01184 481 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 480 - -
Bma07g01184 481 Pfam Regulator of chromosome condensation (RCC1) repeat 237 286 IPR000408 -
Bma07g01184 481 Pfam Regulator of chromosome condensation (RCC1) repeat 289 340 IPR000408 -
Bma07g01184 481 Pfam Regulator of chromosome condensation (RCC1) repeat 343 384 IPR000408 -
Bma07g01184 481 Pfam Regulator of chromosome condensation (RCC1) repeat 183 233 IPR000408 -
Bma07g01184 481 Pfam Regulator of chromosome condensation (RCC1) repeat 132 180 IPR000408 -
Bma07g01184 481 SUPERFAMILY RCC1/BLIP-II 115 417 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01184 - - - twl:119989661 781.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01167 Bma-Chr7:46184146 Bma07g01184 Bma-Chr7:46343003 0 dispersed
Bma07g01184 Bma-Chr7:46343003 Bma10g00506 Bma-Chr10:5928719 0 dispersed
Bma07g01184 Bma-Chr7:46343003 Bma14g01836 Bma-Chr14:39268801 5.61E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g253 . Blo03g01540 . Bda09g00499 . . . . . . Cma01g01201 Cma09g00877 Car01g01026 Car09g00789 Sed04g3120 Cpe06g00700 Cpe02g00708 Bhi09g03400 Tan01g4411 Cmetu07g0621 . Hepe01g1375 Mch11g1083 . Cla11g01774 Cam11g1838 Cec11g1859 Cco11g1869 Clacu11g2000 Cmu11g1809 Cre11g2217 . . . . Lsi04g01323 Csa04g02357 Chy07g00086 . . . . . . . Bma07g01184 . . Cmo01g01255 Cmo09g00866 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004199 2 2 1 3 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01184 Bma_Chr07 FPKM 2.351145 2.366653 4.938846 5.761293 2.400167 1.889464 2.177701 2.83537 2.099401 1.779886