Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01188 ATGGCGGACAGGTTCTTCCCAAACCAGATGCCAGATTTCGGAGTTGAAGCATCAGAAGAAGAAACATCTGCATATTCACTTGGAAGGCTCCTTTTTCTTCCTCAATCAGCACTTTTCGATAAGCTCAAATCAGCAGCTTTGAACGCTAAAGAAACGGTAGTGAGGGAAACATGGGAATTGACGCGAAAGCGTGTGAAAGATTACACTCTTTACACTGGGGCTATGGGGACTGCTTTCTTGGCCTTTAAAGCTTACCAAGTTACCAAGAATGAAAATGATCTTCGATTATGCTCTGAGATTATCAGATCTTGCGATTCTGTTTCTGCAGATTCTGGGCATGTGTCGTTTATCTGTGGAAGAGCTGCTGTTTGTGCTCTTGGTGCAGTGGCAGCTATGAATACCGGCAATGGAAGACTTCTTAACGATTACCTGGCAAAATTTAAACAGATCAAACTTCCTAATGATTTACCAAATGAATTACTGTATGGGAGATCTGGCTACTTATGGGCCTGTTTGTTCTTGAACAAACAAATTGGCAGAGACACAATTCCTTCCATGGACATGAGACGTATCGTGGATGATATTTTCAAGGCTGGCAGACAAATGGCCGCAAAGGAGAAGTCTCCATTGATGTACGAATGGCATGGGAAGAAATATTGGGGTGCTGCTCATGGACTTGCAGGGATTATGCTTGTCTTAATGCACTTGGGACTTAAGCCAGACGAGGCTGAGGAGGTCAAGAACACACTACTTTACATGATCAAGAATAGATTTAGCAGTGGCAATTATCTCTCCAGTGAAGGAAGTGAATCTGACAGACTTGTGCATTGGTGCCATGGCGCTCCCGGAATCGCTCTCACCCTCGTGAAAGCAGCTGAGGTTTTTGGAGATAACGAGATTATGCAAGCGGCCATGGATGCTGGTGAGGTGGTATGGAATCGAGGTCTTCTGAAGAGAGTTGGAATCTGCCATGGAGTCAGTGGAAATGCCTACGTGTTTCTCTCGCTCTATCGATTAACGGGCGAAGTGAAGTACTTGTACAGAGCAAAAGCATTTGCCTGCTTTCTGTATGAAAGAGCGGAAGAACTCATATCAGAGGGGAAAATGAGCGGAGGTGACCGGCCGTATTCATTGTTTGAGGGCGTAGGAGGAATGGCTTATCTGTTTCTGGACATGATCGAACCGTTGGCGGCTCGATTTCCGGCCTTTGAACTATAA 1218 45.24 MADRFFPNQMPDFGVEASEEETSAYSLGRLLFLPQSALFDKLKSAALNAKETVVRETWELTRKRVKDYTLYTGAMGTAFLAFKAYQVTKNENDLRLCSEIIRSCDSVSADSGHVSFICGRAAVCALGAVAAMNTGNGRLLNDYLAKFKQIKLPNDLPNELLYGRSGYLWACLFLNKQIGRDTIPSMDMRRIVDDIFKAGRQMAAKEKSPLMYEWHGKKYWGAAHGLAGIMLVLMHLGLKPDEAEEVKNTLLYMIKNRFSSGNYLSSEGSESDRLVHWCHGAPGIALTLVKAAEVFGDNEIMQAAMDAGEVVWNRGLLKRVGICHGVSGNAYVFLSLYRLTGEVKYLYRAKAFACFLYERAEELISEGKMSGGDRPYSLFEGVGGMAYLFLDMIEPLAARFPAFEL 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46443899 46447311 + Bma026433.1 Bma07g01188 86325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01188 405 PANTHER LANC-LIKE PROTEIN 1 405 - -
Bma07g01188 405 PANTHER LANC-LIKE PROTEIN GCL2 1 405 - -
Bma07g01188 405 SMART LANC_like_2 64 405 IPR007822 -
Bma07g01188 405 CDD euk_LANCL 70 401 - -
Bma07g01188 405 Gene3D - 1 405 IPR012341 GO:0005975
Bma07g01188 405 PRINTS Eukaryotic LanC-like protein family signature 2 15 IPR020464 -
Bma07g01188 405 PRINTS Eukaryotic LanC-like protein family signature 254 269 IPR020464 -
Bma07g01188 405 PRINTS Eukaryotic LanC-like protein family signature 336 354 IPR020464 -
Bma07g01188 405 PRINTS Eukaryotic LanC-like protein family signature 291 312 IPR020464 -
Bma07g01188 405 PRINTS Eukaryotic LanC-like protein family signature 208 220 IPR020464 -
Bma07g01188 405 Pfam Lanthionine synthetase C-like protein 65 405 IPR007822 -
Bma07g01188 405 SUPERFAMILY LanC-like 62 405 - -
Bma07g01188 405 PRINTS LanC-like protein superfamily signature 320 333 IPR007822 -
Bma07g01188 405 PRINTS LanC-like protein superfamily signature 219 235 IPR007822 -
Bma07g01188 405 PRINTS LanC-like protein superfamily signature 158 173 IPR007822 -
Bma07g01188 405 PRINTS LanC-like protein superfamily signature 274 294 IPR007822 -
Bma07g01188 405 PRINTS LanC-like protein superfamily signature 67 85 IPR007822 -
Bma07g01188 405 PRINTS LanC-like protein superfamily signature 375 392 IPR007822 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01188 - - - cit:102614659 607.446
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01170 Bma-Chr7:46228023 Bma07g01188 Bma-Chr7:46443899 0 dispersed
Bma07g01187 Bma-Chr7:46387611 Bma07g01188 Bma-Chr7:46443899 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g259 . Blo03g01538 . Bda09g00498 . Bpe08g01031 . . . . Cma01g01198 . Car01g01023 . Sed01g0663 . Cpe02g00711 Bhi09g03396 Tan01g4417 Cmetu07g0753 . Hepe01g1372 Mch11g1087 . Cla11g01777 Cam11g1841 Cec11g1862 Cco11g1872 Clacu11g2003 Cmu11g1812 Cre11g2220 Cone6ag0132 Cone9ag0157 . . Lsi04g01320 Csa04g02360 Chy07g00089 . . . . . . . Bma07g01188 . . Cmo01g01252 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002987 1 1 1 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 2 2 2 2 2 2 4 4 3 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01188 Bma_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0