Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01219 ATGGCTGAAAACCCTAACATCGGTCTCAATTACGTACCTGGAGCCATTCCTTTGATTTCATCTTCCTTCGATCTAGTTCAGAGAAATTCTAATCTAAAATCCGACCGGTACGAGGCGTCTCCTCCAAGAAATTATCCCTCCCACGATGACGCACCTGAAATGTCTCCCAGTGCTAGAACTCTCAGTGAAATTCTCGTCAGGGCCTCTCCCAATGACGTTGAATCGGCTCTCTCCGCCTCTGGTATACTCCCTTCTCCCGAGCTTGTCCAGGAAGTTCTGAAGTTCTCCTATGGTTACCCATCCGCCGCTATCAAGTTCTTCCGTTGGGCGGGGGTGTCGCAGAAGCACACAGCCTACTCGTGGAACCTGATGGTGGATTTGCTGGGCAAGAACCAGATTTTCGATCCTATGTGGGCCGCCATTCGGTCAATGAAGCAGGAGGAAGTTCTTTCATTGCCCACTTTTGTTTCTGTTTTCGAGAGTTATTGTATTTCAGGCAGGTTTAAAGAGGCGGTTATGAGTTTTGATGTGATGGAAAACTATGGAATCCGGCAGGATGTTGTGGCTGTAAACTCGTTATTGAGTGCAATATGCCGCGAGGACAATCAAACCGCAATGGCTTGGGAATTCTTTGAGAAAATTAAAGAAAAGATTCCTCCGGATGGAGATACCTTTGCCATTTTGTTGGAGGGCTGGGATAAGGAAAGCAATTTGCAAAAATCCAAGTCTACATTGGATGCAATGGTGGTTGGTGTCGGATGGTGCCCGAGAAACATGCTCACTTATGAAGCTTTTTTGATGACACTTGTTCGTGCATCCCAAGCTGAAGAGGCAGTTGAGCTTCTTCGAGCTATGAAACAAAATAACTGCTTGCCTGGTATGAAATTTTTCTCCGATGCTCTTGATTTTATCATTAAAGAGAACGATGTGGCACATGGGATTTCATTGTGGGATATTATGGTAGATGGTGGGTTGGCTCCCAACTTGATAATGTGTAATGCAATGATTGGATTGCTCTGTAACAACAATAGAATTGATGATGCTTTTGAGCTTTTCGATGGAATGATCTTTCATGGTGCTTTTCCTGATTCATTGAGTTATAACATGATTTTTAGTTGTTTGATCAAGAATCGAAAGGTTCATGATGCGTGTAAATTTTTCCTCGAGATGCTGAAAAATGAGTTCCCTCCAACTCATCCCAATTGTGCTGCAGCTATTGCAATGCTATTTGAAGGCGATGATCCTGAAGCAGCATTTGATATTTGGTATTACATGGTTCAGAACCATGTCAAACCCATTGACGATAGTGCAAATGCATTGCTTGTAGGCCTTGGAAATTTAGGTCGATTATCAGAGTTGAAGAGATATGCAGAGGACATGCTTGATCAAAGAATTAGAATAGATGAGTCTACAATGGAAATTTTGAAGACTGCTTTTTATAAGCAGGGAACCATTTTCAGAGATAAGTACGACAGTCTTAGGAGGAAGTGGAAAGCTCTCTAG 1503 43.05 MAENPNIGLNYVPGAIPLISSSFDLVQRNSNLKSDRYEASPPRNYPSHDDAPEMSPSARTLSEILVRASPNDVESALSASGILPSPELVQEVLKFSYGYPSAAIKFFRWAGVSQKHTAYSWNLMVDLLGKNQIFDPMWAAIRSMKQEEVLSLPTFVSVFESYCISGRFKEAVMSFDVMENYGIRQDVVAVNSLLSAICREDNQTAMAWEFFEKIKEKIPPDGDTFAILLEGWDKESNLQKSKSTLDAMVVGVGWCPRNMLTYEAFLMTLVRASQAEEAVELLRAMKQNNCLPGMKFFSDALDFIIKENDVAHGISLWDIMVDGGLAPNLIMCNAMIGLLCNNNRIDDAFELFDGMIFHGAFPDSLSYNMIFSCLIKNRKVHDACKFFLEMLKNEFPPTHPNCAAAIAMLFEGDDPEAAFDIWYYMVQNHVKPIDDSANALLVGLGNLGRLSELKRYAEDMLDQRIRIDESTMEILKTAFYKQGTIFRDKYDSLRRKWKAL 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47093925 47095427 - Bma026470.1 Bma07g01219 86356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01219 500 Pfam Pentatricopeptide repeat domain 176 229 IPR002885 -
Bma07g01219 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Bma07g01219 500 Gene3D Tetratricopeptide repeat domain 87 201 IPR011990 GO:0005515
Bma07g01219 500 Gene3D Tetratricopeptide repeat domain 202 299 IPR011990 GO:0005515
Bma07g01219 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Bma07g01219 500 Pfam PPR repeat family 327 375 IPR002885 -
Bma07g01219 500 PANTHER OSJNBA0019D11.15 PROTEIN 35 499 - -
Bma07g01219 500 TIGRFAM PPR: pentatricopeptide repeat domain 331 363 IPR002885 -
Bma07g01219 500 TIGRFAM PPR: pentatricopeptide repeat domain 366 398 IPR002885 -
Bma07g01219 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Bma07g01219 500 MobiDBLite consensus disorder prediction 33 56 - -
Bma07g01219 500 Gene3D Tetratricopeptide repeat domain 300 497 IPR011990 GO:0005515
Bma07g01219 500 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 35 499 - -
Bma07g01219 500 Pfam PPR repeat 261 290 IPR002885 -
Bma07g01219 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01219 - - - twl:119997052 636.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01219 Bma-Chr7:47093925 Bma02g00206 Bma-Chr2:2240165 2.22E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g948 . . . . . . Bma07g01219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g00467 . . . . . . . . . . . . Cpe06g00595 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011572 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01219 Bma_Chr07 FPKM 4.884194 5.501312 5.042378 4.787148 11.601228 8.760261 11.51735 1.777604 1.360558 1.477546