Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01221 ATGGAGGCCATTCGAAAGCAGGCTAGCAAGCTCAGGGAACAAGTTGCGAAGCAACAGCAGGCGTTATTGAAACAATTAGGTTATTTTGGACATGAAATAAATTTGGTGGATGAAGCTGAGCTTCAGTGTCACCAACAACTTCAAACTCTCTACAGCACCACTCGGGCTGCGAAGCATTTCCAGAGAAATATTGTTCGCGGTATAGGAGGTTTCACAGCTATAAGCTCAAAACAAATGGAAATAGGTGATCTGTTCAGTAATATCTTTTCTTTTTCAGTGAGAAGATTAGCTGAGGATTGTTGTAGATATGCTAATGATGATCCAAATGCTAATTCTTCCCTTGCAAGAGTTGCTTTGAGCTTTGGTGTCTCAGAGCCACTACGGTCACAAATAAAGGGGGCACCATTGGAAGATGCACGACACTTGACTCATCGTTACGAAAAACTGAGGCAGGATGTAGAATCTCAGGTAGCTGAGGTATGGAGACGACAATCCAAGTTCAGAGATTCACCTATATCTTCAGAGAGCTCCATGAGGCTTCAAATGGCAGAGACAAGATTGAGTGAGCTTAAATCTATGATAATGGCATTAGGGAAAGAAGCAATTGCTGCTATGGTTGCAGTTGAAGATGAACAACAACAAGTCACTTTCCACAGACTTCTTACCATGGTGAAAGCAGAGAGATCTTATCATGAAAATGCTCTTGATATTTTAGAAAGGTTGAAAGATGAGATGATTCTAACAACGCAATCAATTGGATCTTCATCTGAATCATCAACTGTGCGTGAAAATACATGTAATGAACCTGGACATGGGGATGTTAAGCTGAAGGAATCCGATGCCAATGACAACATAAACAACAATAGAACCTACGTTATGGCAAAAGTTATCCACCCCTTCGATGCTGGAGTAGATGGAGAATTAAGTCTATCCCTGGATGATTTCGTTGTGCTACTCCAGGTTGGGTCCAATGGATGGTCAGAAGGAGAGTGCAATGGCAAGGTTGGATGGTTTCCATCTGCCTATGTTCAACTGCAGGAGAGCACTGAAGTGAAGGTTTAA 1062 42.0 MEAIRKQASKLREQVAKQQQALLKQLGYFGHEINLVDEAELQCHQQLQTLYSTTRAAKHFQRNIVRGIGGFTAISSKQMEIGDLFSNIFSFSVRRLAEDCCRYANDDPNANSSLARVALSFGVSEPLRSQIKGAPLEDARHLTHRYEKLRQDVESQVAEVWRRQSKFRDSPISSESSMRLQMAETRLSELKSMIMALGKEAIAAMVAVEDEQQQVTFHRLLTMVKAERSYHENALDILERLKDEMILTTQSIGSSSESSTVRENTCNEPGHGDVKLKESDANDNINNNRTYVMAKVIHPFDAGVDGELSLSLDDFVVLLQVGSNGWSEGECNGKVGWFPSAYVQLQESTEVKV 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47127657 47131737 + Bma026472.2 Bma07g01221 86358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01221 353 PANTHER SH3 DOMAIN-CONTAINING 1 347 - -
Bma07g01221 353 SMART SH3_2 292 347 IPR001452 GO:0005515
Bma07g01221 353 SUPERFAMILY BAR/IMD domain-like 42 245 IPR027267 -
Bma07g01221 353 SUPERFAMILY SH3-domain 292 349 IPR036028 GO:0005515
Bma07g01221 353 Coils Coil 180 200 - -
Bma07g01221 353 Coils Coil 1 21 - -
Bma07g01221 353 Pfam Variant SH3 domain 296 344 IPR001452 GO:0005515
Bma07g01221 353 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 1 1 347 - -
Bma07g01221 353 Gene3D SH3 Domains 276 352 - -
Bma07g01221 353 Gene3D Arfaptin homology (AH) domain/BAR domain 110 247 IPR027267 -
Bma07g01221 353 Coils Coil 139 159 - -
Bma07g01221 353 ProSiteProfiles Src homology 3 (SH3) domain profile. 289 348 IPR001452 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01221 - - - qsu:112027004 394.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00428 Bma-Chr5:13738918 Bma07g01221 Bma-Chr7:47127657 2.77E-97 dispersed
Bma07g01221 Bma-Chr7:47127657 Bma14g00958 Bma-Chr14:10937145 1.67E-60 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g923 . . . . . . Bma07g01221 . . . . . . . . . Cpe02g00590 . . . . . . . . . . . . . . . . Cone6ag0875 Cone9ag0881 . . . . . . . Bda09g00465 Bpe08g01063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012200 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 0 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01221 Bma_Chr07 FPKM 16.737715 14.8023 26.118093 24.959749 35.596912 27.799416 38.041462 37.195808 35.390125 37.546089