Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01230 ATGGCTTCATCGTCTAGCAGTGGATTGACGTTCAAGCTGCACCCACTTGTTATAGTTAATATATCAGATCACTTTACGAGAGTTAAGTCCCAAACACAGCCACCCTCCACCACCACTTGTGGCCCCCACTCTTCCACTCTCAGCAACGGAGCTGATGCATTGGTTGTTGTATCTTCTTCCCTCACCACACCCGCACCACGGGTTTACGGGTGTGTTATTGGAGTTCAGCGGGGCCGCACTGTTGAGATCTTCAATAGCTTTGAGCTTCTCTTTGATGCTTCTACTCACTCCCTTGACCGTGCCTTCCTCGAAATGAAACAAGAGCTTTATAAGAAAGTTTTCCCTAATTTCTATGTCCTTGGTTGGTATTCCACTGGGAGTGACGCTCAAGAGTCTGACATGTATATCCATAAAGCTCTAATGGACATAAACGAAAGCCCTGTTTATGTTCTTCTTAACCCTTCAATAAATCCTGCACAAAAGGATCTACCAGTAACCATTTATGAAAGTGAGCTTCACATTATTGACGGGATACCACAAGTGATTTTTGTTCAATCAAACTACACAATAGAGACTGTAGAAGCTGAGAGGATCTCCGTAGATCATGTTGCACATCTTAAACCATCTGATGGGGGTTCTGCTGCTACTCAATTGGCTGCTCACCTCACTGGTATTTATAGCGCCATCAAAATGTTGAATAGCAGAATAAGGGTACTTCACCATTATCTTCTTGCAATGCAGAATGGCGATATTCCTTGGGAGAATTCACTACTCAGACAAGTATCAAGTCTTCTTAGAAGATTACCTGTCATTGAATCGGGGAAATTTCAGGATGATTTCTTAATGGAGTGCAGTGACACACTGTTGATTGCATATCTGGCAATGATCACCAACTGCTCCAGCACGATGAACGAGCTTGTCGACAAATTCAATACTGCATATGACAGGCATACTCGAAGGGGAGGGCGAACTGCTTTTATGTAA 984 43.5 MASSSSSGLTFKLHPLVIVNISDHFTRVKSQTQPPSTTTCGPHSSTLSNGADALVVVSSSLTTPAPRVYGCVIGVQRGRTVEIFNSFELLFDASTHSLDRAFLEMKQELYKKVFPNFYVLGWYSTGSDAQESDMYIHKALMDINESPVYVLLNPSINPAQKDLPVTIYESELHIIDGIPQVIFVQSNYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIYSAIKMLNSRIRVLHHYLLAMQNGDIPWENSLLRQVSSLLRRLPVIESGKFQDDFLMECSDTLLIAYLAMITNCSSTMNELVDKFNTAYDRHTRRGGRTAFM 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47200718 47204818 + Bma026482.1 Bma07g01230 86367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01230 327 Pfam Maintenance of mitochondrial structure and function 194 308 IPR024969 -
Bma07g01230 327 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 327 - -
Bma07g01230 327 Gene3D Cytidine Deaminase, domain 2 1 208 - -
Bma07g01230 327 CDD MPN_CSN6 9 323 IPR033859 GO:0000338|GO:0008180
Bma07g01230 327 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 146 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bma07g01230 327 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 327 - -
Bma07g01230 327 SMART pad1_6 10 173 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bma07g01230 327 ProSiteProfiles MPN domain profile. 46 174 IPR037518 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01230 K12179 COPS6, CSN6; COP9 signalosome complex subunit 6 - vvi:100246357 545.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01314 Bma-Chr4:44577193 Bma07g01230 Bma-Chr7:47200718 1.01E-22 dispersed
Bma07g01230 Bma-Chr7:47200718 Bma09g00952 Bma-Chr9:48909883 0 dispersed
Bma07g01230 Bma-Chr7:47200718 Bma10g00324 Bma-Chr10:2986537 3.67E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g802 . . . Bda09g00455 . Bpe08g01071 . . . . Cma01g01037 . Car01g00912 . . . Cpe02g00854 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma07g01230 . . Cmo01g01076 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006191 2 1 2 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01230 Bma_Chr07 FPKM 12.624176 15.790816 13.922656 12.295678 26.654409 28.140532 32.121635 14.956248 15.459306 16.766666