Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01232 CACAACCTCCCTGCATCGGAGTCTGTCGACGATCGCGAAGCAATCTCCTCAGAGATGGTGATCCAAATTGATGACGCTAATGTAGTTTTGATTAATGGGCCTTGTGCCAATAACAGAGAGGTTTCTGTCGAAAATTCATACGATGGAGAAATATCGCCGAAGGATATCGAAGGAGAAGATGGTGTGAGTGGGCAGCTGCGTTCTCCTACGCTTTCTGCCACCGCCGACGGGGGTTCACCTACTCACCGGAAAGGAGTCGGATTGAAGAAATGGAGAAGAATTAGGAGAGATCATGTCAAGGATGTAAACCCCTTTGCAGATTCTGGTAAAATGTTGAAGCGCGGTTTGCCTTCTTCGATCAACCAGTCTAAACCTCATTTTTCTTCACCAGACACGATGAAGCACCATGGCGAACGTTCCATTGGATCGGAAAGTACAGAGAGGAATGTCGGAATGGTCCCGAGCACGACATTCCCGATTTCAATTCCAGATTCTCGGTTTGCCGTTGGGTCTGATGTTGCTGTTGCTGCTGATTCTGGCACTGAGGACAGTGGTAGCAAGACCTCCACAGCGGCCAGTGGTCCAAAGACAAGGCAGCCGCATTCTGTGCGCGAGAAGAACCGGATAATGAACGCAACCGTGATGAGTTTGGGCGGTGCAGCTTTGCGTTTTCGGCTGGGAAAAGGGCAGAGTGAAGGCAGTAAGAAGCTGAGGGGGGAAAGGGTTAAACCTCAAGAGGAAAACTCCTTGTCCAGCTTGGAATCTGACTCAGTTAACTCCATGTTTGTGCACAATCCTTTTACTGCCAGTAATAACCGAAAACAAGGACGGAAGTCGGGAAATTATGGTGCAGATAATGGCTATGGAGCTCATCAATTTGAACACGAGTATATTGAAGAAGCTGCAAGAGACTACGAGGAAGTGATCGAGGTAGCAGTCGAAGAATTTTCAGAAGATGATGATGCTGCACCATTTTTAGAAAATCATCAGGAGTCTATTTTAACTCTCCAATCTGCTCAGGAAGCCCTTGAAAGAGTTGAATATATATTTACTTTTGCAGAAGTCCAGAAATTAGGGACAATTGGTAGAGAAACAAACCCAACGGGTAGTTCAATCGACAATGACGGTGAATTTGCTAGTTTTGCGTCTACAAACCTGGAAACCTCTGATCCGCACTTGGATTCTCAAAGTATGAGACAAAAAAGTTACTCAGAAATACAAGTATTACAGATGATAGAGAACGTAAAAGTTCTGGTAAGGAAGATGGAGGAGTCCACGGCCATGCTTGCCGCAAAGGAGCTTCATATTACTGAACTCCAAACGGGGATCGACCATTGTTGGTCGACGAAGGAAGAAGCAGTGATCAATACGATGGATGGCATTTATAGGCGAAAGATTGAAGTAGAAGTGGGATATTTAGTATTGACAAGAACAATGCAAGCGATGAAACAGGCAACCGGTATCAAAGAACAAAAGGGTTTGGTTGAGGAGCAAGTAGAGATGATAAACAAGCCCGAAGAAAGAAAAAGCAAAGGGGCAAAGGTCGATAAACGAGTCGAGAGTGAAGAAGTAGTGAAGAAGTTGCAAAGGAGAGTTTGTAAGGTAAGTTGTTGTTTAATGGTTGAGTTGGTGTTGTTAGTGTTAGTGTTGTGGGTTTTTGTGTTGGAGTTTTGGGTAGAGCCTGAGGTAGTTGTGCCCACATAG 1704 45.19 HNLPASESVDDREAISSEMVIQIDDANVVLINGPCANNREVSVENSYDGEISPKDIEGEDGVSGQLRSPTLSATADGGSPTHRKGVGLKKWRRIRRDHVKDVNPFADSGKMLKRGLPSSINQSKPHFSSPDTMKHHGERSIGSESTERNVGMVPSTTFPISIPDSRFAVGSDVAVAADSGTEDSGSKTSTAASGPKTRQPHSVREKNRIMNATVMSLGGAALRFRLGKGQSEGSKKLRGERVKPQEENSLSSLESDSVNSMFVHNPFTASNNRKQGRKSGNYGADNGYGAHQFEHEYIEEAARDYEEVIEVAVEEFSEDDDAAPFLENHQESILTLQSAQEALERVEYIFTFAEVQKLGTIGRETNPTGSSIDNDGEFASFASTNLETSDPHLDSQSMRQKSYSEIQVLQMIENVKVLVRKMEESTAMLAAKELHITELQTGIDHCWSTKEEAVINTMDGIYRRKIEVEVGYLVLTRTMQAMKQATGIKEQKGLVEEQVEMINKPEERKSKGAKVDKRVESEEVVKKLQRRVCKVSCCLMVELVLLVLVLWVFVLEFWVEPEVVVPT 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47232095 47237271 + Bma026484.1 Bma07g01232 86369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01232 567 MobiDBLite consensus disorder prediction 129 143 - -
Bma07g01232 567 PANTHER WPP DOMAIN-INTERACTING PROTEIN 2 33 567 - -
Bma07g01232 567 MobiDBLite consensus disorder prediction 177 207 - -
Bma07g01232 567 MobiDBLite consensus disorder prediction 181 197 - -
Bma07g01232 567 MobiDBLite consensus disorder prediction 44 89 - -
Bma07g01232 567 PANTHER WPP DOMAIN-INTERACTING PROTEIN 2 33 567 IPR044696 -
Bma07g01232 567 MobiDBLite consensus disorder prediction 248 279 - -
Bma07g01232 567 MobiDBLite consensus disorder prediction 229 247 - -
Bma07g01232 567 MobiDBLite consensus disorder prediction 225 286 - -
Bma07g01232 567 MobiDBLite consensus disorder prediction 105 163 - -
Bma07g01232 567 Coils Coil 326 346 - -
Bma07g01232 567 MobiDBLite consensus disorder prediction 144 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01232 - - - cit:102621860 297.745
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01232 Bma14g00656 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01258 Bma-Chr7:47706871 Bma07g01232 Bma-Chr7:47232095 0 transposed
Bma14g00656 Bma-Chr14:7091062 Bma07g01232 Bma-Chr7:47232095 1.57E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g787 Blo03g00479 Blo03g01494 Bda07g00438 Bda09g00453 . Bpe08g01074 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1273 Cone15ag1299 . Csa03g00380 . . . . . . Bpe11g00614 . Bma07g01232 Bma14g00656 . . . . Cma16g00998 . Car16g00955 Cpe14g00821 . . . . . . . . . . . . . . . . . Chy06g01934 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004840 2 1 2 3 2 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01232 Bma_Chr07 FPKM 1.408842 1.231217 1.632523 1.199366 5.262552 4.942749 4.512633 1.630759 1.702751 1.437486