Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01235 ATGGCCGCGGGTCCCCAATGGCTACCGCTCTCCTCCCGATTGGAGAAGAAACGCATAGTCTCCGTTCAGGCCTTGGCCAGGACACACGCTGGAATTGTTCCCAGGCCACGGCCGTCCAGCCTCTACGAGATTCTTCGGGTGAAGAACGACGCCTCAATTGTTGAGATTAAAGCGGCTTACCGGAGCTTGGCTAAGCTTTACCATCCCGACTCTCTGCACCAACCGGGATCCGATGGTCACGATTTTATCCAGATTCACAACGCTTATGCTACGTTGTCCGATTCTTCGGCCAGATCTGTCTACGATTTGTCGCTGGAAAGCCGGAGGAGACGCGGGTTTGGTTTGTATGTTGAGAACCAATCACGGTTTTACCCTGGTCGGAGCTGGGAAACAGACCAGTGCTGGTAG 408 54.41 MAAGPQWLPLSSRLEKKRIVSVQALARTHAGIVPRPRPSSLYEILRVKNDASIVEIKAAYRSLAKLYHPDSLHQPGSDGHDFIQIHNAYATLSDSSARSVYDLSLESRRRRGFGLYVENQSRFYPGRSWETDQCW 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47273462 47273869 + Bma026488.1 Bma07g01235 86372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01235 135 Pfam DnaJ domain 41 102 IPR001623 -
Bma07g01235 135 SMART dnaj_3 39 97 IPR001623 -
Bma07g01235 135 PRINTS DnaJ domain signature 77 97 IPR001623 -
Bma07g01235 135 PRINTS DnaJ domain signature 42 60 IPR001623 -
Bma07g01235 135 PRINTS DnaJ domain signature 60 75 IPR001623 -
Bma07g01235 135 ProSiteProfiles dnaJ domain profile. 40 105 IPR001623 -
Bma07g01235 135 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 16 135 - -
Bma07g01235 135 SUPERFAMILY Chaperone J-domain 40 126 IPR036869 -
Bma07g01235 135 ProSitePatterns Nt-dnaJ domain signature. 82 101 IPR018253 -
Bma07g01235 135 CDD DnaJ 42 94 IPR001623 -
Bma07g01235 135 Gene3D DnaJ domain 36 125 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01235 - - - jre:108985808 136.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01235 Bma-Chr7:47273462 Bma08g00760 Bma-Chr8:44594133 1.98E-20 dispersed
Bma07g01235 Bma-Chr7:47273462 Bma03g00601 Bma-Chr3:4952437 1.68E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g748 . . . Bda09g00449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1289 . . . . . . . . . . Bma07g01235 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004491 1 1 1 1 0 2 2 2 1 1 2 2 0 1 1 1 2 3 1 2 1 1 2 1 2 1 2 1 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01235 Bma_Chr07 FPKM 2.992395 2.941539 3.604109 3.669402 4.191678 3.955455 5.377259 1.755371 1.450615 1.969975