Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01240 TCAACAATGTCAGAAACCGAGACGTTCGCCTTCCAGGCCGAGATTAACCAGCTTCTCAGTTTGATTATCAACACCTTTTACAGCAACAAGGAGATTTTCCTTCGTGAGCTTATTAGCAATTCATCTGATGCTCTAGATAAAATTCGGTTTGAGAGCTTAACTGATAAGAGCAAGCTAGATGCTCAGCCAGAACTGTTCATTCACATTGTCCCTGACAAGACAAACAACACATTGTCTATTATTGACAGTGGTATTGGCATGACAAAGGCTGATTTGGTTAACAACTTGGGAACCATTGCAAGATCGGGAACTAAGGAGTTTATGGAGGCCATTGCTGCTGGTGCTGATGTGAGTATGATTGGACAGTTTGGTGTTGGTTTCTACTCAGCTTACCTTGTTGCAGAGAAGGTCATTGTCACCTCAAAGCACAATGATGATGAGCAGTATGTCTGGGAGTCCCAAGCAGGTGGTTCGTTCACAGTAACCAGAGATACCTCTGGAGAAGTTCTAGGCAGGGGTACAAAAATTACACTCCACCTCAAGGAAGACCAGCTTGAGTATCTTGAGGAGCGCAGACTGAAGGATTTAGTTAAGAAGCACTCCGAGTTTATTAGTTACCCAATTTCTCTTTGGGTGGAGAAAACCACCGAGAAAGAGATCTCTGATGATGAAGATGAAGAGGAAAAGAAGGAAGAGGAAGGAAAGATAGAAGAAATTGATGAAGAGAAGGAAAAGGAAGAGAAGAAAAAGAAAAAGATTAAGGAAGTTTCACATGAATGGTCTTTGGTGAACAAGCAGAAGCCAATCTGGATGAGGAAACCGGAGGAGATCAATAAAGAGGAGTATGCTGCATTCTACAAGAGCCTTACAAACGATTGGGAGGAGCACCTCGCTGTGAAGCATTTCTCAGTTGAGGGCCAGCTTGAGTTTAAAGCAATTTTATTTGTTCCAAAGAGGGCTCCTTTTGATCTCTTCGACACGAGGAAGAAGCCTAACAACATCAAGTTGTATGTCCGCAGAGTCTTCATAATGGACAATTGTGAGGAATTGATACCTGAGTATCTCGGTTTTGTGAAGGGTATCGTTGATTCTGAGGATCTTCCCCTCAACATCTCTAGGGAAATGCTACAGCAGAACAAGATCTTGAAGGTTATTCGCAAGAACCTGGTAAAGAAGTGCATTGAGCTCTTCTTTGAAATAGCTGAAAACAAGGAAGACTACAACAAGTTCTACGAGGCATTTTCTAAGAACTTGAAGCTCGGCATCCATGAGGACTCCACAAACAAGACTAAGATAGCTGAACTACTGCGGTACCACTCCACCAAGAGCGGTGATGAGATGACCAGCCTGAAGGACTATGTTACCAGGATGAAGGATGGCCAAAAGGACATCTATTACATCACTGGTGAAAGCAAGAAGGCAGTTGAGAATTCTCCTTTCCTCGAGAAGCTGAAGAAGAAGGGATACGAAGTTCTTTACATGGTTGACGCCATTGATGAGTACGCAGTAGGTCAACTCAAGGAATTCGAAGGTAAGAAGCTCGTTTCAGCAACCAAGGAAGGATTGAAACTTGACGAAACTGAAGATGAGAAGAAGAAGAAGGAAACATTGAAGGAAAAATTCGAGGAACTGTGCAAGGTAATCAAAGATGTCTTGGGCGACAGAGTAGAGAAAGTCGTCGTGTCTGATCGAGTGGTCGACTCTCCCTGCTGTTTGGTAACTGGGGAGTACGGATGGACTGCCAACATGGAAAGGATCATGAAAGCTCAGGCCCTGAGAGACAGTAGCATGTCTGGTTACATGTCTAGCAAGAAGACGATGGAGATCAACCCAGAAAACCCCATCATGGACGAACTTAGGAAGAGAGCAGACGCTGACAAGAACGACAAGTCGGTGAAGGACCTAGTCCTGCTCCTCTTTGAAACTGCCCTCCTCACCTCCGGCTTCAGCCTGGACGATCCCAACACCTTCGGCAACAGAATCCACAGGATGCTGAAACTTGGCCTGAGCATCGACGACGAGGGCGCTAGCGAGGTCGATCAGGAAATGCCTCCTCTAGAGGATGCAGATGTCGACGGAAGCAAGATGGAGGAAGTTGATTAG 2103 44.98 STMSETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIVPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTSKHNDDEQYVWESQAGGSFTVTRDTSGEVLGRGTKITLHLKEDQLEYLEERRLKDLVKKHSEFISYPISLWVEKTTEKEISDDEDEEEKKEEEGKIEEIDEEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEINKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCIELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSTNKTKIAELLRYHSTKSGDEMTSLKDYVTRMKDGQKDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDETEDEKKKKETLKEKFEELCKVIKDVLGDRVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSGYMSSKKTMEINPENPIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGNRIHRMLKLGLSIDDEGASEVDQEMPPLEDADVDGSKMEEVD 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47345593 47348444 + Bma026492.1 Bma07g01240 86377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01240 700 Gene3D - 4 231 IPR036890 -
Bma07g01240 700 SUPERFAMILY Ribosomal protein S5 domain 2-like 265 520 IPR020568 -
Bma07g01240 700 Coils Coil 524 544 - -
Bma07g01240 700 SMART HKATPase_4 29 184 IPR003594 -
Bma07g01240 700 MobiDBLite consensus disorder prediction 217 250 - -
Bma07g01240 700 SUPERFAMILY HSP90 C-terminal domain 543 665 IPR037196 -
Bma07g01240 700 Coils Coil 213 259 - -
Bma07g01240 700 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 3 692 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma07g01240 700 MobiDBLite consensus disorder prediction 675 700 - -
Bma07g01240 700 Gene3D - 433 519 - -
Bma07g01240 700 Gene3D - 264 432 - -
Bma07g01240 700 PRINTS 90kDa heat shock protein signature 77 94 IPR020575 -
Bma07g01240 700 PRINTS 90kDa heat shock protein signature 172 189 IPR020575 -
Bma07g01240 700 PRINTS 90kDa heat shock protein signature 190 208 IPR020575 -
Bma07g01240 700 PRINTS 90kDa heat shock protein signature 28 50 IPR020575 -
Bma07g01240 700 PRINTS 90kDa heat shock protein signature 120 142 IPR020575 -
Bma07g01240 700 PRINTS 90kDa heat shock protein signature 7 27 IPR020575 -
Bma07g01240 700 PRINTS 90kDa heat shock protein signature 95 112 IPR020575 -
Bma07g01240 700 Hamap Chaperone protein HtpG [htpG]. 4 666 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma07g01240 700 Pfam Hsp90 protein 186 687 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma07g01240 700 MobiDBLite consensus disorder prediction 219 240 - -
Bma07g01240 700 PANTHER HEAT SHOCK PROTEIN 81-2 3 692 - -
Bma07g01240 700 CDD HATPase_Hsp90-like 16 204 - -
Bma07g01240 700 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 183 IPR003594 -
Bma07g01240 700 ProSitePatterns Heat shock hsp90 proteins family signature. 27 36 IPR019805 GO:0005524|GO:0006457|GO:0051082
Bma07g01240 700 Gene3D - 520 669 IPR037196 -
Bma07g01240 700 PIRSF HSP90_HTPG 1 700 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma07g01240 700 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 6 215 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01240 K04079 HSP90A, htpG; molecular chaperone HtpG - sind:105176572 1184.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01240 Bma-Chr7:47345593 Bma08g00293 Bma-Chr8:4009881 0 dispersed
Bma07g01240 Bma-Chr7:47345593 Bma13g00489 Bma-Chr13:9172593 2.68E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g722 . . . . Bpe09g00109 Bpe08g01086 . . Cmo16g01031 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00880 Bda05g00671 Bda12g00984 . Bpe03g00745 Bma07g01240 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01240 Bma_Chr07 FPKM 1.106003 1.006748 1.398906 0.71245 1.411077 1.099796 1.432394 4.35593 4.445966 5.336489