Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01247 ATGAAATCGAGAGAGGGTTTGACGAGGGTGGGGATCAGGATCAGGGGGATCAGTTTCATCGAAACGAAGCGATCTCCTGCTGTTGCGGATGAGGGTTTTTTGGGGGAGGAGGATGATGATGACTACGAAGACCTTTATAACGACGTTAATGTTGGTGACGGGTTTCTTCAGTCTTTGAGGAAGAACGAGGATTCTGGGTTTAGAAACGAGGAAGAGAAGAAGATTGAAGTAGCTATGGTAGCTCAAAACCCTGGTGTTTCTATACCAGGTGTTGGCGGTGGTAGTGGGGAAGGTAGTGGTGGCGCTGTAAGGGATGGAGGGTCCAGTGTTGCAAGATTAGCAGAGGGCTACAATCAGAGTCAAGGGTTTAGAGGCAACGATATGGGTATGGGAGGAACAGTCGGATCAAAGCCATTGATCGGTGGTGGAGGTGGGATTAGAGTTGAATTAGGGCAAGGAAGTAAAATGAATGAGAATGAGGAACAAAGTGGTAATACTGATATTGGCGTTCAAGGGATTGGTCAGCATCTTCCACCACAGCAAATACAGCAACAGCAACGACAACAAACACCACCACCGTCACTTGGTGGAGTCATAGGAAATGTCGGGATTATCGATAATGATAATTTTGGAAGGCAAGGTGGAGGAGGAAATGTGAATGGGTATGGTGGCAACAGCCTAGGAAATACAGGCGGCGGCGGCGGTGGTGGTGCAGGGACTATTTTATTTGTGGGTGATTTGCATTGGTGGACTACTGATGCTGAGCTGGAGGCCGAGCTTTGTAAGTACGGGCCAGTGAAGGAGGTGAAGTTTTTCGACGAGAAGGCTAGTGGGAAGTCAAAAGGGTACTGCCAGGTTGAATTTTATGATTCTAGTGCAGCCACAGGTTGCAAGGAGGGAATGAATGGTCACAGTTTTAATGGACGTCCTTGTGTTGTTGCATACGCATCGCCCTACAGTGTTAAGAGAATGGGAGAGGCTCAAGTAAATAGGAGTCAACAGATGGCTCAATCTACTGTCTCTCAAACGAGGAGAGGTCCCAATGATGTTCAAGGCAAGCCCGGTGGGAATACCATCGGCACAGGTGGTAACAATCAAGGTGGTGATAATACTAATACTAATACTAATAATAATAATAACAACAATAGAGGTTTTGGAAGAGGTAATTGGGGCAGGGGTAATGCTCAGGGAATGGGGAATAGAGGTCCAGTTGGTCTGATGAGGAATAGGGGTGGTGCGATGGGTGGGAGAGGTATAATGGGTAATGGTGGAAATGGTTTTGGTCAAGGTATTGGTGCAGCTCCTCATTTGTTGCATCCACAGTCAATGATGGCTCAAGGTTTTGATCCAGCTTTTGGTGGGCCAATGGGAAGAATGGGACCTTATGGTGGCTTCCCTGGGGCCCCTGCACCACCTTTCTCTGGGATTTTATCGTCATTTCCACCTGTGGGAGGTGTTGGTCTTCCTGGTGTTGCCCCGCATGTAAATCCTGCCTTTTTTGGAAGAGGGATGCCCATGAATGGATTGGGGATGATGCCTGCACCAGGTGTTGATGGACCTAATATGGGTATGTGGGCAGATCCTAGTATGGGCGGCTGGGTTGGTGAGGAGCATGGCGGTGGAAGAGCTGGGGAGTCCAGTTATGGGGAAGAGGCCGCATCTGAGCATCAGTACAATGAAGTTAGTCACGACAGAGGTGGGTGGCAAAATAATATGAAAGAGAAAGATAGAGGTTCAGAAAGAGACTGGTCCGGGTCTTCAGACCGTAAATATCGTGATGATAGAGAGCCGGGAACTGATAAAGACATGCCTAGAGAAAAAGATGTTGGCCCTGACCATGAGTGGATAGAGAGAAGACATCGCGATGAGAGAGAATCAGGCCGAGATAGGGATAAAGAGCGTGAAGCTCTGAACTTTTTACCATTTTATGGCTATAGTATGAGCTCTACTCACATTGTTCTTTGTTGCTTAGCTTGA 1977 47.8 MKSREGLTRVGIRIRGISFIETKRSPAVADEGFLGEEDDDDYEDLYNDVNVGDGFLQSLRKNEDSGFRNEEEKKIEVAMVAQNPGVSIPGVGGGSGEGSGGAVRDGGSSVARLAEGYNQSQGFRGNDMGMGGTVGSKPLIGGGGGIRVELGQGSKMNENEEQSGNTDIGVQGIGQHLPPQQIQQQQRQQTPPPSLGGVIGNVGIIDNDNFGRQGGGGNVNGYGGNSLGNTGGGGGGGAGTILFVGDLHWWTTDAELEAELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDSSAATGCKEGMNGHSFNGRPCVVAYASPYSVKRMGEAQVNRSQQMAQSTVSQTRRGPNDVQGKPGGNTIGTGGNNQGGDNTNTNTNNNNNNNRGFGRGNWGRGNAQGMGNRGPVGLMRNRGGAMGGRGIMGNGGNGFGQGIGAAPHLLHPQSMMAQGFDPAFGGPMGRMGPYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGLGMMPAPGVDGPNMGMWADPSMGGWVGEEHGGGRAGESSYGEEAASEHQYNEVSHDRGGWQNNMKEKDRGSERDWSGSSDRKYRDDREPGTDKDMPREKDVGPDHEWIERRHRDERESGRDRDKEREALNFLPFYGYSMSSTHIVLCCLA 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47459777 47462937 + Bma026501.2 Bma07g01247 86384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01247 658 CDD RRM_CFIm68_CFIm59 242 315 - -
Bma07g01247 658 Gene3D - 170 335 IPR012677 -
Bma07g01247 658 MobiDBLite consensus disorder prediction 329 387 - -
Bma07g01247 658 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 26 638 IPR034772 -
Bma07g01247 658 MobiDBLite consensus disorder prediction 86 107 - -
Bma07g01247 658 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 242 311 IPR000504 GO:0003723
Bma07g01247 658 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 26 638 - -
Bma07g01247 658 MobiDBLite consensus disorder prediction 556 633 - -
Bma07g01247 658 MobiDBLite consensus disorder prediction 329 403 - -
Bma07g01247 658 MobiDBLite consensus disorder prediction 528 633 - -
Bma07g01247 658 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 240 318 IPR000504 GO:0003723
Bma07g01247 658 SUPERFAMILY RNA-binding domain, RBD 239 328 IPR035979 GO:0003676
Bma07g01247 658 SMART rrm1_1 241 314 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01247 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 - zju:107433910 683.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01247 Bma14g00681 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01247 Bma-Chr7:47459777 Bma02g01289 Bma-Chr2:55100964 9.42E-11 dispersed
Bma14g00681 Bma-Chr14:7362259 Bma07g01247 Bma-Chr7:47459777 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g660 . Blo03g01482 Bda07g00411 Bda09g00437 . Bpe08g01092 . . . . Cma01g01076 Cma09g01007 Car01g00952 Car09g00919 . Cpe06g00817 Cpe02g00822 Bhi09g01762 . . . . Mch11g1266 . . . . . . . . . . . . Lsi02g01829 Csa07g00874 . . . . . . Bpe11g00588 . Bma07g01247 Bma14g00681 . Cmo01g01121 Cmo09g01010 . . . . . . . . . . . . . Cla09g02076 Cam09g2161 Cec09g2227 . . . . . . Chy01g01147 Cme01g00911
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002318 2 3 2 2 2 2 2 2 2 1 2 2 3 2 2 3 2 2 3 2 3 1 1 2 2 2 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01247 Bma_Chr07 FPKM 24.738384 26.281029 37.255741 37.297916 13.822972 11.817596 14.35849 64.245598 68.425407 78.647285