Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01249 TTGTTGACTGTAACTTTTGCTTTTCCGATTTCCGTTTACTTTTCAGAACTTACGAGATCTATCATCGTCGATCTTAGCAATGGAAGGATACCGATGATCTCCATTGATAAATTTCGTAGCTACTGCGCGAATTCCGATTCCAACTGCTGTTGCCGGTGTGGTTTGCCAAAAGGCATGGAGATTCTTACTTTTCGAAATCCAAACCAGTTACGCAGATTAGATGCCTTCCTCAGAGTTTTACTCATTGTCCAGCAGCTTCTGCTAGAAAATAGACATGGATCAAAGAGAGACATATATTACATGCATCCTTCCTTATTTTCTGTATTATGTTATTTTATTACAGAGCAGACAGTTGTAGATCAGGCAATCAATGATATATGTATTATTTTTCAATGCAGCCGCCATGATTTGAATGTGTCTTTTTTTTTCAGATTGGTAATGGGATGGTTAAGATTTTTGCAAGCCGGAAGGAGATTTGATTGCATAAAAGAGCCTAACACGGTAAGGAGAAATTTTTATTATACAAGTACTGGCTTTTTTACCACTGTTAACCATTATGACTTCACAATGACAGTGTTTCAGCGATTGGCAAATGATCAGTTCTGCAGCAGAAATCGTTGTATTGTCATAACAAAAATGGCCTATGATGCAAAGTATTTAAAGATCCCAGAGATACGCTGGCTCGGTGTTTTTCCTTCAGATTCTGAAAAATACCATCTTCCAAAGCAATGCCTTCTTCCTTTGACAGACAAAGATAGAAAGAAGGCCGAAGCAATGCTACTTAGGTGCTACCTTCGAAGAGAAGAACCACAGTGGAGGTTGGAATTGTGCTTGATGATTCAAAGAGGTGTGAAATTCGAGATTGAAGCGCTATCTGTTTGCAAGCTTTCCTTTTTGTCGGAGGATTACATACCATCAAAGATTCACGAAATTCTCAACATGTAA 945 38.41 LLTVTFAFPISVYFSELTRSIIVDLSNGRIPMISIDKFRSYCANSDSNCCCRCGLPKGMEILTFRNPNQLRRLDAFLRVLLIVQQLLLENRHGSKRDIYYMHPSLFSVLCYFITEQTVVDQAINDICIIFQCSRHDLNVSFFFRLVMGWLRFLQAGRRFDCIKEPNTVRRNFYYTSTGFFTTVNHYDFTMTVFQRLANDQFCSRNRCIVITKMAYDAKYLKIPEIRWLGVFPSDSEKYHLPKQCLLPLTDKDRKKAEAMLLRCYLRREEPQWRLELCLMIQRGVKFEIEALSVCKLSFLSEDYIPSKIHEILNM 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47470520 47473557 + Bma026503.1 Bma07g01249 86386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01249 314 Gene3D - 145 213 - -
Bma07g01249 314 Pfam Type IIB DNA topoisomerase 71 139 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Bma07g01249 314 Gene3D - 13 140 IPR036388 -
Bma07g01249 314 PRINTS DNA topoisomerase VI subunit A family signature 116 133 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bma07g01249 314 PRINTS DNA topoisomerase VI subunit A family signature 95 106 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bma07g01249 314 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 212 311 - -
Bma07g01249 314 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 16 211 - -
Bma07g01249 314 SUPERFAMILY DNA topoisomerase IV, alpha subunit 70 310 IPR036078 GO:0003677|GO:0005694
Bma07g01249 314 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 212 311 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bma07g01249 314 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 16 211 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bma07g01249 314 Gene3D - 214 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01249 K10878 SPO11; meiotic recombination protein SPO11 - zju:107404703 333.954
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g649 . Blo03g01480 . . . Bpe08g01095 . . . . . Cma09g01003 . Car09g00914 . Cpe06g00811 . Bhi09g01751 . . . . Mch11g1260 . . . . . . . . . . . . Lsi02g01841 Csa07g00937 . . . . . . . . Bma07g01249 . . . Cmo09g01003 . . . . . . . . . . . . . Cla09g02064 Cam09g2153 Cec09g2218 . . . . . . Chy01g01164 Cme01g00928
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005619 0 4 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01249 Bma_Chr07 FPKM 5.84127 6.225121 8.341418 8.71601 3.429002 3.899671 4.21637 17.616045 17.054432 18.121195