Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01254 ATGGCCGCTTGTATCCAATCTTCTAAAGCCAATCCGCTTTCCTACGATTCTTACTCTTGCCAATCCAATGATACTTCCTGCAAAATCATGAAATTTTGCCGACCTAGCTTTTCCGATTCTTTGTCTTGCATCCCAATTTGCCATAATCGGTCGAGGAACCTATGTACGAGTAAAATCAAGGAGGAGACTAATCGCGACTATGACGATGTCGATGCCGATCTTTGGCGGAGAATCCGAGAAGAAGCTCGGGTTGATGTGGAGCAGGAGCCGATTTTATCAGACTTCTATTGCGATTCCATCTTTTCGCACAATTCGTTGGAAAGTGCCCTAGCTAATCACCTAGCGATTAAATTGAGCAATTCCAGTCTTCCTCGGAACACCTTGTACGATCTGTTTCTCGAGGAATTGACGGAGGATGAAGAAATTTCTAGGGCAGTCAAGTATGATTTGAGAGCTGTGAAGGAGCGAGATCCAGCCTGCATAAGCTTCGTCCATTGTTTATTAAATTTCAAAGGCTTTCTGGCTGTTCAAGCGCATAGAGTTTCCCACAAATTATGGGGTCTATTACTCGATCACGCCACGGGTGTCGTCGTCGGAGAGACGGCGGTTATCGGAAACAATGTTTCAATTCTGCATAACGTGACTCTAGGAGGAACGGGGAAAGCTTCAGGAGACAGGCATCCGAAGATCGGCGACGGAGTTTTAATCGGGGCCGGAACTTGTATTTTAGGAAACATTAAGATCGGAGAAGGGGCTAAGATCGGCGCTGGATCGGTGGTTTTGAAAGAAGTTCCACCAAGAACAACAGCAGTCGGAAATCCAGCGAGACTGGTGGGAGGAAAAGAGAATCCATTGAAGCTCGACAAAATCCCGAGTTTTACCATGGATCACACATCTTACATATGTGAGTGGTCTAACTATGTAATTTAA 930 45.48 MAACIQSSKANPLSYDSYSCQSNDTSCKIMKFCRPSFSDSLSCIPICHNRSRNLCTSKIKEETNRDYDDVDADLWRRIREEARVDVEQEPILSDFYCDSIFSHNSLESALANHLAIKLSNSSLPRNTLYDLFLEELTEDEEISRAVKYDLRAVKERDPACISFVHCLLNFKGFLAVQAHRVSHKLWGLLLDHATGVVVGETAVIGNNVSILHNVTLGGTGKASGDRHPKIGDGVLIGAGTCILGNIKIGEGAKIGAGSVVLKEVPPRTTAVGNPARLVGGKENPLKLDKIPSFTMDHTSYICEWSNYVI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47505325 47506347 + Bma026509.1 Bma07g01254 86391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01254 309 SUPERFAMILY Trimeric LpxA-like enzymes 71 279 IPR011004 -
Bma07g01254 309 Gene3D Hexapeptide repeat proteins 191 296 - -
Bma07g01254 309 Pfam Serine acetyltransferase, N-terminal 74 178 IPR010493 GO:0005737|GO:0006535|GO:0009001
Bma07g01254 309 Gene3D serine acetyltransferase, domain 1 55 190 IPR042122 -
Bma07g01254 309 SMART SATase_N_2_a 74 178 IPR010493 GO:0005737|GO:0006535|GO:0009001
Bma07g01254 309 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 236 264 IPR018357 GO:0016740
Bma07g01254 309 PANTHER SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC 187 309 - -
Bma07g01254 309 PANTHER SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC 1 186 - -
Bma07g01254 309 Pfam Bacterial transferase hexapeptide (six repeats) 227 261 IPR001451 -
Bma07g01254 309 PANTHER SERINE ACETYLTRANSFERASE 187 309 - -
Bma07g01254 309 PANTHER SERINE ACETYLTRANSFERASE 1 186 - -
Bma07g01254 309 CDD LbH_SAT 187 274 IPR045304 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01254 K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] - zju:107403319 409.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01254 Bma-Chr7:47505325 Bma09g00228 Bma-Chr9:9877597 8.20E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g635 Blo03g00516 Blo03g01477 Bda07g00397 Bda09g00422 . Bpe08g01100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00576 . Bma07g01254 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001381 4 9 3 1 3 1 3 2 2 1 1 1 2 3 2 3 1 6 3 2 2 2 1 2 2 2 2 3 3 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01254 Bma_Chr07 FPKM 13.766926 14.39204 10.249428 10.764012 14.421947 14.782876 15.239092 8.960356 9.84488 9.849453