Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01265 ATGGACGAGTCTTTTATCTCCTTCCCAATGCTCTGCTCCCTCTTGCTTCTCCTGCTAATGGCAGTGAGGATAACCAGAAGAAACACCTCATCTCCAAAACTGCCACCTGGCCCATGGAAATTTCCCATCGTTGGCGATATGCACCGCTTGATCGGCGACCACCCCCACACCCGCTTGAAACAACTGGCCGACAGATACGGTCCGGTGATGCATCTGCAACTTGGAGAAATCTCCACCGTCGTCGTTTCCTCGGCCGAAATGGCGAGAGAGGTCATGAAAACCCACGACCTTAATTTTGCTAACCGACCTGCTACTCTCTTGAGCTCTTACTTACTGTATGGCCAAAAAGACATCGCCTTTGCTCCCTATGGAGATTACTGGAGAGAGATGAGAAAAATATGTACGCTTGAACTTTTTAGCTTGAAGAGGGTTCAGTCATTTCGGCCAATTATGAACCGAGAAACAGCGAAAATGGTGGAAGAGCTCGAATCTAACAATGGGTCGGTGGTGAATTTGAGTAAAATGATATTTTCCCTTCTTAATACCATCAATGCCAACACTGCGTTTGGAGGAAAGTGTAACGAGCAGGAAGAGTTTCTTGCTATATCGGAAAAGCTTGTGTTTTTGATGACTGGTTTTCGGCTGGTTGATGTCTTTCCTTCCCTCAAAATTTTGCATTACGTCGGTGGATCTAAGAATAAAGCTGAAAAAATCCATAAAGAATGCGACCGAATACTGCAAAACATCATAGACGCACATAAATCAGAGCCAGACAATGGCAAATCCGATGGAGATGTTGAAGAACCAGATGATCTTGTTAATGTTCTTCTCAAAATTCAAGAAAACGGCGGCCTGCCGTTTTCGAGGGCTCACGAAAATGTGAAGGCAATTATCTTGGATATTTTCGTTGCAGGAACAGATACATCGTCCACGCTGATCGAGTGGGTGATCTCAGAGCTCACAAGACAACCAGAAATGATGAAGAAAGCTCAAGCTGAAATCAGACAAGTTTTCGATTTGAAAAGAGAAATAGACGAAACAGGTCTCCTAGAACTAAAATACTTCAAACTAATCATAAAAGAAACGCTGAGACTACACCCCCCACTCCCATTACTTCTCCCGAGAGAAAGCATAAACAATGGCGAAATCAACGGATACCACATTCCAGCCAAAGCAAAAGTGATCGTCAATGCCTGGGCAGTTGGAAGAGACCCCAAAATATGGACAGACCCAGAAAGATTTAACCCAGAAAGATTTATGGAAAGAGACGTAGACTTTAAGGGAGCAAGCTTTGAAATAATTCCGTTCGGAGGAGGAAGAAGAATTTGTCCAGGAATGACGCTAGGGTTAGCCACTTCGGAACTAATTCTAGCAAATTTGCTCTACCATTTCAACTGGGTAATTCCAGACGGAGGAAAACCAGAAGAGCTTGATATGGCTGTCTCTTACGGAGCAATAAACAAAAGGCTGAACGGACTGAAACTGATTCCTGTTCATTATAATCGTCCGATCAAGACAATACCTTAG 1527 43.88 MDESFISFPMLCSLLLLLLMAVRITRRNTSSPKLPPGPWKFPIVGDMHRLIGDHPHTRLKQLADRYGPVMHLQLGEISTVVVSSAEMAREVMKTHDLNFANRPATLLSSYLLYGQKDIAFAPYGDYWREMRKICTLELFSLKRVQSFRPIMNRETAKMVEELESNNGSVVNLSKMIFSLLNTINANTAFGGKCNEQEEFLAISEKLVFLMTGFRLVDVFPSLKILHYVGGSKNKAEKIHKECDRILQNIIDAHKSEPDNGKSDGDVEEPDDLVNVLLKIQENGGLPFSRAHENVKAIILDIFVAGTDTSSTLIEWVISELTRQPEMMKKAQAEIRQVFDLKREIDETGLLELKYFKLIIKETLRLHPPLPLLLPRESINNGEINGYHIPAKAKVIVNAWAVGRDPKIWTDPERFNPERFMERDVDFKGASFEIIPFGGGRRICPGMTLGLATSELILANLLYHFNWVIPDGGKPEELDMAVSYGAINKRLNGLKLIPVHYNRPIKTIP 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48057991 48059625 - Bma026529.1 Bma07g01265 86402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01265 508 PANTHER OS08G0105600 PROTEIN 12 501 - -
Bma07g01265 508 PANTHER CYTOCHROME P450 71D8 12 501 - -
Bma07g01265 508 Gene3D Cytochrome P450 27 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma07g01265 508 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma07g01265 508 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma07g01265 508 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma07g01265 508 Pfam Cytochrome P450 35 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma07g01265 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Bma07g01265 508 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma07g01265 508 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma07g01265 508 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma07g01265 508 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma07g01265 508 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma07g01265 508 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma07g01265 508 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma07g01265 508 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma07g01265 508 SUPERFAMILY Cytochrome P450 35 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01265 - - K23806 tcc:18593317 551.206
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01302 Bma-Chr2:55157674 Bma07g01265 Bma-Chr7:48057991 4.61E-143 dispersed
Bma07g01265 Bma-Chr7:48057991 Bma12g01058 Bma-Chr12:42675774 8.84E-120 dispersed
Bma07g01256 Bma-Chr7:47701647 Bma07g01265 Bma-Chr7:48057991 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g633 . . . Bda09g00418 . Bpe08g01101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma07g01265 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01265 Bma_Chr07 FPKM 5.637028 9.233081 19.473383 18.845255 56.794594 49.401474 55.528816 7.221124 6.647675 6.899108