Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01268 ATGAAAATGGATTCCTTCGATTCCTCAATGAACGGTATGACTGCCTTAATGCATTCTGGTATTGATTTCATTTTGGACCCTGTTTTCCTACGTGGGTTATCCGGTCTGTTGCACCTCGTCTTGTTATTTGGGTTATTTTTTCTCTGGGTGCGCAAAATATTGAAGCTGAATCGTGATGGAAGTCCAAAAGAAAGGCTTAGGAGCAGAGGGTGTTCGCTCGATAAGCTGACTTTTGCTTTGAGTCTCTGCTTTTCTGTTTTCAATCTTCTCTTTTGTTTTTTGAACTACTTTTACTGGTATAAAAATGGATGGTCTGAAGAAAATCTGGCGATACTTTTGGATATGGCTCTTAGAACTCTAGCTTGGTTTGCTGTTTCTGTTTATCTATATACCCAAGTTGGAAAAAAGCCTCCTTTTCCATTGAGAGTTTGGTGGGGTTTCTTCTTCTCTCTTTCTTGTTATTACATTTTCATCGACTTCGTCCGTCACAAAAAGCAAGGTTTTGTACCAGTACATGACATAGTTTTCGATGTTGTGTCGGCCATAAGTGGTCTATTCTTCACTTGTATGGGGGTTTTAGGGAAGAGGGTGAGTGATCAAACAAATCTTGAAGAACCACTTTTAAATGGTCATGTAGACGCCATTAAAGAGTCTGGGAATTTTAAAGGGGACCAAACTGTTACCCCTTACTCGACTGCGGGAATTTTAAGTATTCTTTCCTTCTCTTGGATGGGTCCTCTAATTGCCGCTGGCAATAAGAAGACATTAGACCTTGAGGATGTTCCTCAACTTTCCAGCAAAGATAGTGTCTCAGCGACTTATCCTAGGTTTCAAAATAAGCTCGAATCTGATTGTGGTAGAATTGATGGAATCACCACATTTAGTCTGGTGAAGGCATTGATCTACTCTGCCTGGAGGGAGATACTTCTAACGGCACTTTTGGCCTGCCTCTACACTCTGGCATCTTATGTAGGCCCTTATCTAATCGACACCTTCGTCCAATACCTCAACGGTACTCAGCAATTTGAAAATGAAAGCTATGTACTAGTAGCTGCATTTTTTGGTGCAAAGATTGTGGAGTGTCTCTCAATGAGACATTGGTTCTTTAGGCTGCAAGTGGTTGGAATTCGGATGAGAGCAGTTCTTAACGCAATAATATACAATAAAGCCTTGACCCTCTCGGGCCAATCCAAGCAGAAACACACGAGTGGAGAGATCATTAATTTTATGACAGTCGATGCAGGGAGGGTCGGGGAATTTAGTTGGTACATGCACGAACCATGGATGGTCCTTCTGCAGGTTTCTTTGGCCTTGTTGATTTTGTATAAAAATCTCGGGGTTGCTTCAGTTGTAACTTTTGTTGCGACTGTACTTGTTATGTTAGCGAATGTTCCTTTGGGAAAATTGCAAGAGAGGTACCAAGACAAGATAATGGAGTCAAAAGATAATAGAATGAAGGCAACGTCCGAAATCTTGCGAAACATGAGGATACTCAAGCTTCAAGGATGGGAGATGAAGTTTCTCTCGAAAATTGTTGAGCTGAGGAAGGTCGAGGCGGGATGGTTGAAAAAATATCTTTACACTGTGGCTATGACCTCATTTGTCTTCTGGGGGGCTCCCACATTTGTCTCTGTGGTGACTTTTGGTGCTTGTATTTTCATGGGGATCCCACTAGAATCTGGCAAAATTTTATCTGCTCTTGCAACTTTTAGAATTCTTCAAGAACCCATTTACAGTCTTCCTGACACAATATCAATGATGGTTCAAACTAAAGTTTCTCTTGACAGAATTGTCTCCTTCCTTCGACTTGACGACTTGCAAACTGATATCGTTGAGCAGCTTCCTAAGGGTAGTTCTGATATGGCAGTTGAGATTGCAGATGGGAATTTCTCATGGGATTTATCTTCTCCAAATTCAACTCTTCAAGATATTAACTTTAAAGTGTCCCGAGGTATGAGGGTTGCTATTTGTGGAACTGTAGGTTCCGGCAAGTCGAGCTTGCTTTCATGTGTCTTAGGAGAGGTACCTAAGATTTCGGGAAGTCTTAAAGTTTGTGGAACCAAAGCATATGTAGCTCAGTCGCCTTGGATTCAAAGTGGAAAGATAGAAGAGAATATCTTGTTTGGTAAAGAGATGGACAGAAGGAAGTATGATAGGGTTCTTGAGGCTTGCTCACTGAAGAAAGACCTTGAAATTCTCCCTTTTGGCGATCAGACCGTGATTGGGGAGAGAGGGATAAATTTGAGTGGTGGGCAGAAGCAAAGAATACAAATTGCACGTTCTCTCTATCAAGACGCTGATATCTACTTGTTTGACGATCCGTTTAGTGCGGTTGATGCTCATACTGGTTCTCACCTCTTTAAGGAATGCTTACTCGGCCTTTTAAGTTCAAAAACAGTGATTTATATAACTCATCAAGTAGAATTTTTACCTATTGCTGATCTTATCTTGGTAATGAAGGATGGAAAGATCACTCAAGCTGGAAAGTACAATGAAATTCTTGCTGCAGGAACTGATTTTATGGCACTCGTGGGTGCACATAAGGAAGCTCTGTCAGCACTTGATTCTGTAGATAGAGAGCCTGCTGCGGAAAACTTATCCAATCCCACTGACGATGTCAATGGCGTCGTTAGAGACGAAGAAAACGGAGATATTCAAGATGGTAAAGCAGAAGGTGAAACTAAATCGAAAGGCCAGCTGGTTCAAGATGAAGAGAGAGAGAAAGGCAAAGTTGGGTTTGCAGTTTATTGGAAATATCTTACATCTCCATTTGGAGGAGCTCTTGTGCCATTTATACTACTCTCTCAGATTCTCTTTCAGATTCTTCAAATAGGAAGCAATTACTGGATGGCTTGGGCATCTCCGGTCTCCGAGGATGTGAAGCCGAATGTCCAAGGTTCTAAACTTATTATCGTTTATGTGGCCCTGGCAATTGGAAGTTCTCTTTGTGTCCTTGCAAGAACAACTCTTCTCGTCACTGCTGGCTATAATTCGGCGACTCTACTCTTCAACAAAATGCATCAATGCATTTTCCGAGCCCCCATGTCGTTTTTCGACTCGACGCCTAGTGGACGAATCTTGAGCAGGGCTTCTACCGATCAAAGTGCAGTAGATATGGACATTCCATTTCGAGTTGGATCTTTCTCCTTTTCATTGATCCAACTTCTCGGAATTATTGCAGTAATGTCTCAGGTTGCTTGGCAGGTTTTCATTATTTTTGTCCCTGTAATTGCGCTATGTGTTTGGTATCAGCAATATTATATTCCTTCGGCTAGAGAGCTGGCTCGTTTAGTTGGAGTCTGTAAAGCTCCGGTTATACAACATTTTGCAGAAACGATTTCCGGGGCATCTACCATTAGGAGCTTCGACCAAGAATCAAGATTTAGAGACTTGAATATGAAGCTGACGGATGGATATTCTCGGCCCAAGTTCAACAATGCAGCAGCAATGGAATGGCTCTGCTTTCGACTGGATATGTTATCGTCCATTACTTTCGCCTTTTCTTTGATTTTCCTAATCTCCATCCCTCGAGGAATTATCGATCCCGGCATTGCTGGCTTGGCCGTGACCTATGGACTTAACCTGAATATGATACAAGCTTGGCTAATATGGAACCTGTGTAATATGGAAAACAAAATGATATCAGTGGAGAGAATACTGCAGTATGCTTCGATCCCTAGTGAGCCACCTTTGGTTGTCGAAGAAAACCAACCAGATAACGCGTGGCCTTCGTGTGGAGAAGTTGAAATTCGTGATCTACAGGTTCGATATGCACCACACTTGCCACTCGTGTTGCGAGGAATCTCGTGTACTTTTCCGGGAGGTAAAAAGACTGGAATCGTTGGAAGAACAGGCAGTGGAAAATCTACTCTGATTCAGACACTTTTCCGGATAGTTGAACCAGCTGCCGGAGAAATAAAAATTGATAAAATCAATATCTCTTCAATTGGACTGCACGATTTGAGATTGAGGCTGAGCATTATTCCTCAGGATCCAACCATGTTTGAAGGGACCGTTCGAAGCAACTTGGACCCACTCGAAGAGTATACCGATGAACAAATTTGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAGTCAGGAAAAAAGAAGGAAAGCTAGATTCATCAGTCAGTGAGAATGGTGAGAACTGGAGTATGGGTCAGAGGCAACTTGTCTGCCTTGGCCGGGTTCTGCTGAAGAAAAGTCGGGTTTTGGTTCTCGATGAGGCTACTGCCTCTGTCGATACAGCTACCGATAATCTTATACAGCAAACTCTCAGACAGCATTTTTCGAACTGCACCGTCATCGTAATTGCCCATCGAATTACTTCTGTTCTCGACAGTGACATGGTTCTTCTCCTCAATCACGGGCTCGTCGAGGAGTATGATTCGCCGAACAGATTGCTGGAGAACAAGTCTTCGGGTTTTGCTCAGCTTGTATCGGAGTACACTGTTAGGTCTAATACGAGTTTAGAGAAGTTTTAG 4488 42.51 MKMDSFDSSMNGMTALMHSGIDFILDPVFLRGLSGLLHLVLLFGLFFLWVRKILKLNRDGSPKERLRSRGCSLDKLTFALSLCFSVFNLLFCFLNYFYWYKNGWSEENLAILLDMALRTLAWFAVSVYLYTQVGKKPPFPLRVWWGFFFSLSCYYIFIDFVRHKKQGFVPVHDIVFDVVSAISGLFFTCMGVLGKRVSDQTNLEEPLLNGHVDAIKESGNFKGDQTVTPYSTAGILSILSFSWMGPLIAAGNKKTLDLEDVPQLSSKDSVSATYPRFQNKLESDCGRIDGITTFSLVKALIYSAWREILLTALLACLYTLASYVGPYLIDTFVQYLNGTQQFENESYVLVAAFFGAKIVECLSMRHWFFRLQVVGIRMRAVLNAIIYNKALTLSGQSKQKHTSGEIINFMTVDAGRVGEFSWYMHEPWMVLLQVSLALLILYKNLGVASVVTFVATVLVMLANVPLGKLQERYQDKIMESKDNRMKATSEILRNMRILKLQGWEMKFLSKIVELRKVEAGWLKKYLYTVAMTSFVFWGAPTFVSVVTFGACIFMGIPLESGKILSALATFRILQEPIYSLPDTISMMVQTKVSLDRIVSFLRLDDLQTDIVEQLPKGSSDMAVEIADGNFSWDLSSPNSTLQDINFKVSRGMRVAICGTVGSGKSSLLSCVLGEVPKISGSLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDRRKYDRVLEACSLKKDLEILPFGDQTVIGERGINLSGGQKQRIQIARSLYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVIYITHQVEFLPIADLILVMKDGKITQAGKYNEILAAGTDFMALVGAHKEALSALDSVDREPAAENLSNPTDDVNGVVRDEENGDIQDGKAEGETKSKGQLVQDEEREKGKVGFAVYWKYLTSPFGGALVPFILLSQILFQILQIGSNYWMAWASPVSEDVKPNVQGSKLIIVYVALAIGSSLCVLARTTLLVTAGYNSATLLFNKMHQCIFRAPMSFFDSTPSGRILSRASTDQSAVDMDIPFRVGSFSFSLIQLLGIIAVMSQVAWQVFIIFVPVIALCVWYQQYYIPSARELARLVGVCKAPVIQHFAETISGASTIRSFDQESRFRDLNMKLTDGYSRPKFNNAAAMEWLCFRLDMLSSITFAFSLIFLISIPRGIIDPGIAGLAVTYGLNLNMIQAWLIWNLCNMENKMISVERILQYASIPSEPPLVVEENQPDNAWPSCGEVEIRDLQVRYAPHLPLVLRGISCTFPGGKKTGIVGRTGSGKSTLIQTLFRIVEPAAGEIKIDKINISSIGLHDLRLRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSSVSENGENWSMGQRQLVCLGRVLLKKSRVLVLDEATASVDTATDNLIQQTLRQHFSNCTVIVIAHRITSVLDSDMVLLLNHGLVEEYDSPNRLLENKSSGFAQLVSEYTVRSNTSLEKF 1495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48122944 48128301 - Bma026534.3 Bma07g01268 86405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01268 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1250 1482 IPR003439 GO:0005524
Bma07g01268 1495 CDD ABC_6TM_ABCC_D2 929 1223 IPR044726 GO:0140359
Bma07g01268 1495 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma07g01268 1495 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524
Bma07g01268 1495 Gene3D - 604 863 IPR027417 -
Bma07g01268 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 846 IPR003439 GO:0005524
Bma07g01268 1495 SUPERFAMILY ABC transporter transmembrane region 300 602 IPR036640 GO:0005524|GO:0016021
Bma07g01268 1495 CDD ABCC_MRP_domain1 623 823 - -
Bma07g01268 1495 Pfam ABC transporter transmembrane region 310 575 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma07g01268 1495 Pfam ABC transporter transmembrane region 932 1174 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma07g01268 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 845 IPR027417 -
Bma07g01268 1495 SUPERFAMILY ABC transporter transmembrane region 929 1229 IPR036640 GO:0005524|GO:0016021
Bma07g01268 1495 CDD ABCC_MRP_domain2 1246 1466 - -
Bma07g01268 1495 Gene3D - 1231 1484 IPR027417 -
Bma07g01268 1495 SMART AAA_5 1274 1459 IPR003593 -
Bma07g01268 1495 SMART AAA_5 650 823 IPR003593 -
Bma07g01268 1495 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 107 1494 - -
Bma07g01268 1495 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 107 1494 - -
Bma07g01268 1495 MobiDBLite consensus disorder prediction 882 903 - -
Bma07g01268 1495 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Bma07g01268 1495 Pfam ABC transporter 1265 1413 IPR003439 GO:0005524
Bma07g01268 1495 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 931 1211 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma07g01268 1495 Gene3D ABC transporter type 1, transmembrane domain 288 603 IPR036640 GO:0005524|GO:0016021
Bma07g01268 1495 Gene3D ABC transporter type 1, transmembrane domain 891 1229 IPR036640 GO:0005524|GO:0016021
Bma07g01268 1495 Pfam ABC transporter 641 775 IPR003439 GO:0005524
Bma07g01268 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1240 1474 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01268 - - K05666 zju:107433578 2214.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01169 Bma-Chr2:53850315 Bma07g01268 Bma-Chr7:48122944 0 dispersed
Bma07g01268 Bma-Chr7:48122944 Bma09g00514 Bma-Chr9:41616428 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g625 . Blo03g01469 . Bda09g00417 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g01855 . . Cme06g02771 . . . . . . Bma07g01268 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01268 Bma_Chr07 FPKM 11.453643 12.907548 46.897064 48.884808 0.46238 0.739747 0.370685 0.433623 0.466789 0.422244