Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01269 ATGGCCGTTTTCTCTCTCTACCTTATCACTCCTCCTACTCCTCAGGCTCACTCTCCCTACTCGTCTTCTTCTTCTTCTTCGTCGTGTTTCTATGGAAGAGGAATTTACAGGAGAAGGAATGCCGTCTCTAGGTTCGTTGTCTTGTCGACGCACTCCAGCCCTAGAATTCTCAAACTCAATAAAAAATCGAGGTCTGGTCAGGTTCTGTCTCCCTTTGATAGCGATGAAGACGAGGATTACGAGGAGGGTGATAGTGATGGGGATGGTAATGATTGGAATACTGAGGATGGATTTTCAGACAGTCATGCTAAACTATGGGCAAAGACCAGAAATAGATGGATTGGATGCCTGTCATTCGACAAGCAATATTATAAGCCAAAGTCACACTTCCTACAAGGGGCAACTAAGTTCTTTGCATATGAAGGGCAGAGTGAAGGTACTACAATAGTTAATAAAATTTTTAACTTGAATATATGCAAATCTTATAAATTTTCTCTTTACTTGTTAAGCCTCGGGGTCAAACAAAGAGACATAAGAAGAATACTTTTGAGGCAACCCCAAATCCTGGATACACTGGAGAAAAATTTGAAATCTCATGTTGCTTTCTTGCTAAGCTTGGGTATCCCGTATAGTGTTGAGAATTCGTTAAAACCAACTGTTAGATACTTGATCGAGGAGGTTGGCATAAAGGAGAAAGAGTTGGGTAAAGTAGTGCAGTTAAGCCCACAAATTTTGGTTCAAAAAATCAATATATCATGGAACACTAGATATATGTTTCTCACAAAGGAACTGGGAGCTTCTAGAGATAGCATAGTGAAGATGGTGAAAAAACATCCCCAACTTCTACATTATAGCATTGATGATGGATTGCTACCTAGAATCAATTTCCTTCGAAGTATCGGAATGCAAAATTCAGACATCTTGAAAGTTTTAACCGGCCTCACTCAGGTATTGTCTTTATCCTTGGAGGACAATTTGAAGCCTAAGTACATGTACTTGATAAATGAACTACATAACGAAGTGAATATCTTGACTAAATATCCAATGTACTTTAGCTTGTCCTTAGAGCAGAGAATTCGCCCTCGACACAAATTCTTGGTTGCACTAAAGAAAGCTCCCAAGGGACCGTTTCCTCTAAGTTCATTTGTTCCAACTGATGAATGTTTTTGTCAGCAGTGGGCTGGAACGACCTTAGATAAATATCTGGCATTTAGGCAGAAATTACTTCTGAAGGAGTTTGCAAAGAAATACGAAAGGAAAAAATGA 1266 39.42 MAVFSLYLITPPTPQAHSPYSSSSSSSSCFYGRGIYRRRNAVSRFVVLSTHSSPRILKLNKKSRSGQVLSPFDSDEDEDYEEGDSDGDGNDWNTEDGFSDSHAKLWAKTRNRWIGCLSFDKQYYKPKSHFLQGATKFFAYEGQSEGTTIVNKIFNLNICKSYKFSLYLLSLGVKQRDIRRILLRQPQILDTLEKNLKSHVAFLLSLGIPYSVENSLKPTVRYLIEEVGIKEKELGKVVQLSPQILVQKINISWNTRYMFLTKELGASRDSIVKMVKKHPQLLHYSIDDGLLPRINFLRSIGMQNSDILKVLTGLTQVLSLSLEDNLKPKYMYLINELHNEVNILTKYPMYFSLSLEQRIRPRHKFLVALKKAPKGPFPLSSFVPTDECFCQQWAGTTLDKYLAFRQKLLLKEFAKKYERKK 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48215839 48218335 + Bma026536.1 Bma07g01269 86406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01269 421 MobiDBLite consensus disorder prediction 72 93 - -
Bma07g01269 421 MobiDBLite consensus disorder prediction 66 93 - -
Bma07g01269 421 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF9, CHLOROPLASTIC 165 413 - -
Bma07g01269 421 SMART mt_12 179 209 IPR003690 GO:0003690|GO:0006355
Bma07g01269 421 SMART mt_12 341 373 IPR003690 GO:0003690|GO:0006355
Bma07g01269 421 SMART mt_12 308 340 IPR003690 GO:0003690|GO:0006355
Bma07g01269 421 SMART mt_12 235 267 IPR003690 GO:0003690|GO:0006355
Bma07g01269 421 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Bma07g01269 421 PANTHER CGI-12 PROTEIN-RELATED 35 93 IPR003690 GO:0003690|GO:0006355
Bma07g01269 421 Pfam mTERF 210 369 IPR003690 GO:0003690|GO:0006355
Bma07g01269 421 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF9, CHLOROPLASTIC 35 93 - -
Bma07g01269 421 PANTHER CGI-12 PROTEIN-RELATED 165 413 IPR003690 GO:0003690|GO:0006355
Bma07g01269 421 Gene3D Transcription termination factor 3, mitochondrial 149 408 IPR038538 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01269 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - zju:107435498 445.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01269 Bma-Chr7:48215839 Bma09g01014 Bma-Chr9:49597366 2.58E-17 dispersed
Bma07g01266 Bma-Chr7:48104595 Bma07g01269 Bma-Chr7:48215839 6.22E-180 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g617 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0026 Cone9ag0025 . . . . . . . . . . . . Bma07g01269 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g00946
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002407 4 3 3 3 1 1 2 1 2 2 1 1 2 2 2 1 1 4 2 2 1 1 0 2 2 1 2 5 2 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57660 PF02536 mTERF 1.40E-29 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01269 Bma_Chr07 FPKM 0.0 4.119119 0.0 0.0 0.0 17.042841 0.0 0.0 0.0 0.0