Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01292 AAGTTCAATATGCCTTCAGCTCAAGATCCATTCTACGTTGTGAAGGATGAAATCCAAGAATCTATTGATAAGTTGCAACAAACTTTTCACCGATGGGAGCTCATTTCTGATTTAGGAGAGCGATCAAAACTTACAAATGAGCTGCTTGCTAGCTGTGATAGTATTGAGTGGCAGATCTTCCACTCTATCAAGTACTTTTTGATGGTTATGAACAAGTGTATGATTCTTAGCATGAGAGCCATTAAACAAATAGATGAAAAAACAGTAGATGAATTAGACAAGGCTATAGCTGTTGCTGTCAGAGATCCGGCTTGGTATGGAATTGATGAAGTGGAGCTTGAAAAACGGAGGAGATGGACTAGTACAGCTCGCGCTCAGGTTGGCTCTGTGAAAAAGGTAGTGAAAACTGGGAAGGAGCTGAATGGTATTGGCAATACAGCCACAAATATGAATGGAATACGTCGAGAACTGTTGAGAGTGCCTAATTCTAATGAAAGAGACAGGGCCAACCAGTACGATGTTCAAGATAATGATGATTTCATAGCTTCAGAATCAGATCGGCAGTTGCTTCTCATAAAGCGACAAGATGAAGAATTGGATGAGCTCAGTGCCAGCGTGGAGAGAATTGGAGGAGTTGGGCTAACAATACATGATGAACTCCTTTCCCAGGAGAAAATTATCGATGAATTAGGAGCAGAACTGGATAGTACATCAAATCGTCTTGACTTTGTTCAGAAAAAAGTAGCCGTGGTCATGAAGAAGGCTGGTCTTAAGGGACAGATAATGATGATTGCGTTTTTAGTGGTTTTGTTCATAATTCTCTTTGTGCTGGTGTTTTTAACTTAG 846 40.43 KFNMPSAQDPFYVVKDEIQESIDKLQQTFHRWELISDLGERSKLTNELLASCDSIEWQIFHSIKYFLMVMNKCMILSMRAIKQIDEKTVDELDKAIAVAVRDPAWYGIDEVELEKRRRWTSTARAQVGSVKKVVKTGKELNGIGNTATNMNGIRRELLRVPNSNERDRANQYDVQDNDDFIASESDRQLLLIKRQDEELDELSASVERIGGVGLTIHDELLSQEKIIDELGAELDSTSNRLDFVQKKVAVVMKKAGLKGQIMMIAFLVVLFIILFVLVFLT 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48531868 48534402 + Bma026564.2 Bma07g01292 86429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01292 281 Pfam Syntaxin 6, N-terminal 86 131 IPR015260 GO:0016020|GO:0048193
Bma07g01292 281 Pfam Syntaxin 6, N-terminal 9 59 IPR015260 GO:0016020|GO:0048193
Bma07g01292 281 Gene3D - 196 258 - -
Bma07g01292 281 SUPERFAMILY t-snare proteins 86 132 IPR010989 GO:0016020|GO:0016192
Bma07g01292 281 SMART tSNARE_6 184 251 IPR000727 -
Bma07g01292 281 CDD SNARE_Qc 192 249 - -
Bma07g01292 281 PANTHER SYNTAXIN 4 280 IPR045242 -
Bma07g01292 281 Coils Coil 227 247 - -
Bma07g01292 281 PANTHER SYNTAXIN-61 4 280 - -
Bma07g01292 281 SUPERFAMILY SNARE fusion complex 188 251 - -
Bma07g01292 281 Pfam SNARE domain 226 277 IPR000727 -
Bma07g01292 281 Gene3D - 78 137 - -
Bma07g01292 281 Gene3D - 5 61 - -
Bma07g01292 281 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 189 251 IPR000727 -
Bma07g01292 281 SUPERFAMILY t-snare proteins 8 59 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01292 Bma-Chr7:48531868 Bma10g00582 Bma-Chr10:7155146 3.05E-06 dispersed
Bma07g01329 Bma-Chr7:48806264 Bma07g01292 Bma-Chr7:48531868 0 transposed
Bma14g00333 Bma-Chr14:4169954 Bma07g01292 Bma-Chr7:48531868 1.25E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01292 K08500 - qsu:112025744 331.643