Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01293 ATGAAGATGGCAGTGGCAGCTATCGCAAGAAGAAGGAGGTTGTTGAACGACAATATCATCGTCTCTTTGGCCGATATTTCCTGGGAAACGCTTGATGTTTCAAGTTCAGATGTTTCGGACTCTGGCTTAGTGAAAGTGGCTGAAATATGCAAATATCTTCGAGCTGTTGATATAAGCCGATGCAGAGATATTACCGCAGCCGGTATTTCCGAACTTGTAAAGCACTGTAACTCTTTGGAAACCTTACGATGTGGAGGGTGCACGAGAAGTGATGACACTGCTCGAAGGTGCTTGGGTATATTTAAGCCAAAGCTTAATGACATGGAGGAAGAGTCTTGGGAAGATCTTACCGCTGCTGAAATTGCCGACGGCACGCAGTCAATGAGGTGGCTCGTATGGCCGACAATCACTAAAGAATCGTTGGAAAACTTCTCCATGGAGTGTCCTCGCATTTCCGTCAATCCAAAGCCATCGCCTTTCGGTTTTAGGGGAGCTCAAGTTCCTAGAGAAGCATTGCCAAACATAACTCTGGATTATCCTTTTGTAGAGGGCATAGATCCTAAAACGTGGGCAGTGACAGGAATTACTGCAGTGGCTACACCGTCCCAGCCGGGTGAGGAGGAATTGTCAATGGCTGAAAAATTTAGGCTAGCATTTGTCGAAAGAGACAACAGGCTGGCTCCAAAACGAGCAAAAAACGCTAGGCAGCATCAGCGGCGTGCGGAGAGGGATTGGATGATGATGAATTCGAATGCCAAGGCACTGGCACTTGCCTCGGTCGCCAGTAGGAATTTGCCTACTCGGAATTAA 810 47.41 MKMAVAAIARRRRLLNDNIIVSLADISWETLDVSSSDVSDSGLVKVAEICKYLRAVDISRCRDITAAGISELVKHCNSLETLRCGGCTRSDDTARRCLGIFKPKLNDMEEESWEDLTAAEIADGTQSMRWLVWPTITKESLENFSMECPRISVNPKPSPFGFRGAQVPREALPNITLDYPFVEGIDPKTWAVTGITAVATPSQPGEEELSMAEKFRLAFVERDNRLAPKRAKNARQHQRRAERDWMMMNSNAKALALASVASRNLPTRN 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48534837 48536687 - Bma026565.1 Bma07g01293 86430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01293 269 SUPERFAMILY RNI-like 26 105 - -
Bma07g01293 269 PANTHER UNCHARACTERIZED 3 265 - -
Bma07g01293 269 SMART LRR_CC_2 50 75 IPR006553 -
Bma07g01293 269 Gene3D Ribonuclease Inhibitor 7 133 IPR032675 -
Bma07g01293 269 Pfam Leucine Rich repeat 29 47 IPR001611 GO:0005515
Bma07g01293 269 Pfam Leucine Rich repeat 50 72 IPR001611 GO:0005515
Bma07g01293 269 PANTHER OS06G0679700 PROTEIN 3 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01293 - - - zju:107433068 390.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01293 Bma-Chr7:48534837 Bma02g00287 Bma-Chr2:3324753 1.46E-06 dispersed
Bma07g01293 Bma-Chr7:48534837 Bma11g00852 Bma-Chr11:29235029 2.79E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g517 . Blo03g01453 . . . Bpe08g01120 . . . . Cma01g01127 . . . Sed04g3213 . Cpe02g00775 Bhi09g01650 Tan01g4558 Cmetu01g1354 . Hepe01g1269 Mch11g1193 . . . . . . . . . . . . Lsi02g01901 Csa07g01096 . . . . . . . . Bma07g01293 . . Cmo01g01178 . . . . . . . . . . . . . . Cla09g01012 Cam09g1069 Cec09g1069 Cco09g1087 . . Cre09g1033 . . . Cme01g01030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012078 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01293 Bma_Chr07 FPKM 10.323529 8.25462 9.7011 12.983599 10.675204 7.834538 17.557001 5.53959 6.85398 6.548885