Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01300 ATGCGAAAGCTTCATCCGCTTCGTCCCGCGACTCCATATCCTGTATGTTTAGACGATCCCCTGTTCGTAATTTCTCGCTTATTCAGCAAATCGCTGCCGGAAAAGGATTACGACCCTCCATTTTCTCCGGTTACCAGACCTCCAAAGTCTCCCCAAAACAAGAAGAAAACCCAGGAAGCGTCAATTACCAAGAAAGAGCCGCCTTCCCCTCTCGTCTCCGATCTTCCCTTCGACTTCAGATACTCCTACTCCGAGACCAACCCCTCGGTCGACCCCATCGGATTCCGAGAATCTCCAAAGTTTTCTCCTTTCGGACCAAACCGGCTGGCCCGAAAATGGAATGGCACATCTGCGCCGTCGCAAGTCGACGCGGACAGCGAAAAAGTTCAGGAAGAGAGGAATCGTATTCTTGGAGACCCACTCTCCGACGAGGAAGTTGCAGAGCTAGTTGAAAAATACCGCCATAACCACTGCTCTCGCCAAATCAATCTAGGAATTGGAGGTGTTACTCACAACATGCTAGATGACATCCATAACCATTGGAGAAGGGCCGAGGCCGTGAGGATCAAGGCGTTGGGGGTGCCTACTCTTGACATGGACAATGTCTGCTTCCACCTTGAGGATAAATCCGGCGGGAAGATTATCTATCAACATATAAACATCTTGCTCTTATATCGGGGTCGGAATTACGACTCCAAAACTCGGCCCGTTATTCCCCTCATGCTGTGGAAGCCTTACGCGCCGATATACCCAAAGCTCGTGAAGAAGATTGTCGACGGGTTAGCATTCGAGGAAATGAAGGAAATGAGGAACAGAGGACTGAACTCTCCCCCAATAATGAAACTCACAAGAAATGGGGTTTATGTAAATGTAGTGAGAAAACTGCAGGAAGCATTCGAGTCGGAGGAAGTCGTTCGACTCGATTGCACCCATGTTGGTAGCAGCGATTGCAAGAAGATAGGACTGAAATTAAGGGATCTTGTACCTTGCGTGCCTATTCTGTTCAAGGATGGGCAAATCATACTATGGTCGGGGAAGAGAGATCGGATCGAGGACTCCGACCAATCGAATGAAAAAGATGATACCCATTTGCCCAGTCGACCAATGATGTAA 1113 48.79 MRKLHPLRPATPYPVCLDDPLFVISRLFSKSLPEKDYDPPFSPVTRPPKSPQNKKKTQEASITKKEPPSPLVSDLPFDFRYSYSETNPSVDPIGFRESPKFSPFGPNRLARKWNGTSAPSQVDADSEKVQEERNRILGDPLSDEEVAELVEKYRHNHCSRQINLGIGGVTHNMLDDIHNHWRRAEAVRIKALGVPTLDMDNVCFHLEDKSGGKIIYQHINILLLYRGRNYDSKTRPVIPLMLWKPYAPIYPKLVKKIVDGLAFEEMKEMRNRGLNSPPIMKLTRNGVYVNVVRKLQEAFESEEVVRLDCTHVGSSDCKKIGLKLRDLVPCVPILFKDGQIILWSGKRDRIEDSDQSNEKDDTHLPSRPMM 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48601927 48603351 - Bma026575.1 Bma07g01300 86437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01300 370 MobiDBLite consensus disorder prediction 351 370 - -
Bma07g01300 370 ProSiteProfiles CRM domain profile. 259 355 IPR001890 GO:0003723
Bma07g01300 370 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 23 355 IPR044599 GO:0000373
Bma07g01300 370 MobiDBLite consensus disorder prediction 35 73 - -
Bma07g01300 370 Gene3D - 140 236 IPR035920 -
Bma07g01300 370 Gene3D - 261 361 IPR035920 -
Bma07g01300 370 SUPERFAMILY YhbY-like 141 236 IPR035920 -
Bma07g01300 370 PANTHER CRS2-ASSOCIATED FACTOR 2, MITOCHONDRIAL 23 355 - -
Bma07g01300 370 SUPERFAMILY YhbY-like 261 347 IPR035920 -
Bma07g01300 370 Pfam CRS1 / YhbY (CRM) domain 264 343 IPR001890 GO:0003723
Bma07g01300 370 Pfam CRS1 / YhbY (CRM) domain 144 226 IPR001890 GO:0003723
Bma07g01300 370 MobiDBLite consensus disorder prediction 112 132 - -
Bma07g01300 370 ProSiteProfiles CRM domain profile. 139 237 IPR001890 GO:0003723
Bma07g01300 370 SMART CRS1_YhbY_2 261 344 IPR001890 GO:0003723
Bma07g01300 370 SMART CRS1_YhbY_2 141 226 IPR001890 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01300 - - - mcha:111010593 526.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01145 Bma-Chr2:53375641 Bma07g01300 Bma-Chr7:48601927 4.18E-106 dispersed
Bma07g01300 Bma-Chr7:48601927 Bma15g00177 Bma-Chr15:1878430 4.20E-37 dispersed
Bma07g01300 Bma-Chr7:48601927 Bma14g01799 Bma-Chr14:38592848 2.07E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g497 . Blo03g01448 . Bda09g00398 . Bpe08g01126 . . . . . Cma09g00946 . Car09g00860 . Cpe06g00762 . . . . . . . . . . . . . . . . . . . Lsi04g01206 . . . . . . . . . Bma07g01300 . . . Cmo09g00945 . . . . . . . . . . . . . Cla05g01493 Cam05g1609 . Cco05g1638 Clacu05g1589 Cmu05g1492 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010205 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01300 Bma_Chr07 FPKM 12.546905 11.640002 6.628809 7.768348 11.548114 12.9515 13.26945 9.406664 9.767244 10.76559