Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01310 ATGGAGTTTTCATGCAGTCCCTTATTTCACGTAGCACTGTTATTGCTCTCGTTTTCATATGTTGACGTCTGTCTCGGACAAGATTACGACAACGATGACGCGGCCGCTCCTCCGCCGGGGCAGAACGACTGCGATGGCATTTTCCTGTCCTACACTTTCATTTCTCGGCAGAAAGAATATCCACACGTGAAAAACGTGTCCGGCCAATCGTGGGCATTCAAGTCTCAGGCGACGATACTGAATGCCGGGTCTACCGAGCTCAAAGCGTGGAAAATGTTCATCGGCTTCCAACACCGAGAGATATTGGTTTCCGTTAGTTCCGCCGTTGTAGTTGACGGCGATGACTTCCCGGCAGTAGTCGGGAATGGGACGACACTAGCGGGATACCCACAGGCGGATTTAATGACTTCCATTGATACAGCAGGAGACCTTGATCAAATTCAGGTGAAGATAGAATTGACAGGAACGCAGTTCGGGGTGAAACCCCCCGGAGTTCCGATGCCGGCGACTATTCGGCTCGTCAACGACGGGTTCAGGTGCCCAGCTGTTCATCATCACGGGACAAGCTCAATGTACGTTTGCTGCAAAAAAGACCCAAAATTCAAAGCAAAAAACACCCAGAAAACAAAATTCTTGCCCAGGCAGAACGGCGATCTCTCTATTTCATATGATGTTATTCAAGCCTATGGAAGTAGCTATCTAGGACAGGTCACGATCGAGAACCAAAACCCGTTAGGCCGGCTCGATAAGTGGAACTTGACATGGGAGTGGATGAAAGGAGAGTTCTCTGCATATTACAACGACTCAGTAATTCCGTGCAATACTTGTTCTTGCGGCTGCGAAGAAGACGACTCGAAAACTTGCAATCCCGAGGCTCGAGCTTTGCTCCTCCCTGCAGAAGCTCTTCTCGTCCCATTCGAAAACAGAACGGTAAAGGCAAAAGCCTGGGCTAAGCTAAAGCACTTTACTCTCCCGAAGAAACTGCCTTGCTCGGATAATTGTGGAGTTTCCATCAACTGGCACGTCAACTCCGATTATCGGAGCGGATGGCTGAATGCTCCGATCAAAACCCTCTCTAATGGAGATTCTGTCTTCAAACTAGAACAATCAGGTCCACATTACTTCATAAGTGGAAGTAAAGAGAACTGCAAGAAAAATGAAAAGTTGGTAGTGGTTGTTTTAGCTGATAGAACCAACCACTCTTCCACTTCTCCTCCTCCCTCTGACTTCACCGGCAACACCCCCTCTCCGACACCATCCGGCGAAGAGTCTCCAAATCCACCGCCCGGAACCTGGGAGATCAACCCAACTCCGTCGCCAGTATCAGAACCACCACCAAACGGGGCGTCATCAGCCATTGTCAGTTTCCTTGGTTGCTTTGCAGCACTTGCTTGTTCGTCTCTAGTTCTAGTCTTCTAG 1419 49.26 MEFSCSPLFHVALLLLSFSYVDVCLGQDYDNDDAAAPPPGQNDCDGIFLSYTFISRQKEYPHVKNVSGQSWAFKSQATILNAGSTELKAWKMFIGFQHREILVSVSSAVVVDGDDFPAVVGNGTTLAGYPQADLMTSIDTAGDLDQIQVKIELTGTQFGVKPPGVPMPATIRLVNDGFRCPAVHHHGTSSMYVCCKKDPKFKAKNTQKTKFLPRQNGDLSISYDVIQAYGSSYLGQVTIENQNPLGRLDKWNLTWEWMKGEFSAYYNDSVIPCNTCSCGCEEDDSKTCNPEARALLLPAEALLVPFENRTVKAKAWAKLKHFTLPKKLPCSDNCGVSINWHVNSDYRSGWLNAPIKTLSNGDSVFKLEQSGPHYFISGSKENCKKNEKLVVVVLADRTNHSSTSPPPSDFTGNTPSPTPSGEESPNPPPGTWEINPTPSPVSEPPPNGASSAIVSFLGCFAALACSSLVLVF 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48663140 48666989 - Bma026586.1 Bma07g01310 86447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01310 472 Gene3D - 306 406 IPR008972 -
Bma07g01310 472 MobiDBLite consensus disorder prediction 398 419 - -
Bma07g01310 472 PANTHER COBRA-LIKE PROTEIN 7 262 351 - -
Bma07g01310 472 PANTHER COBRA-LIKE PROTEIN 7 11 262 - -
Bma07g01310 472 MobiDBLite consensus disorder prediction 398 447 - -
Bma07g01310 472 MobiDBLite consensus disorder prediction 420 445 - -
Bma07g01310 472 Pfam Plastocyanin-like domain 312 385 IPR003245 GO:0009055
Bma07g01310 472 SUPERFAMILY Cupredoxins 341 395 IPR008972 -
Bma07g01310 472 Pfam COBRA-like protein 233 264 IPR006918 GO:0010215|GO:0031225
Bma07g01310 472 PANTHER COBRA-LIKE PROTEIN 7 11 262 - -
Bma07g01310 472 PANTHER COBRA-LIKE PROTEIN 7 262 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01310 - - - csv:101216608 370.548
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01310 Bma13g01035 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01310 Bma-Chr7:48663140 Bma12g00729 Bma-Chr12:33309745 4.19E-14 dispersed
Bma13g01035 Bma-Chr13:42938329 Bma07g01310 Bma-Chr7:48663140 1.36E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g458 . . . . Bpe09g00187 Bpe08g01136 . Bma13g01035 Cmo16g00909 Cmo04g01012 . . . . Sed07g1929 . . Bhi09g01934 Tan01g4517 Cmetu06g0182 . Hepe01g1303 . . Cla10g00527 Cam10g0521 Cec10g0538 Cco10g0528 Clacu10g0543 Cmu10g1369 Cre10g0772 Cone6ag0084 . Cone14ag1126 . Lsi04g01234 Csa03g00533 . Cme06g02279 . Blo10g00811 . Bda12g00896 . . Bma07g01310 . . . . Cma04g00942 Cma16g00850 Car04g00880 Car16g00854 . Cpe01g00854 . . . . . . . Cla05g01523 Cam05g1636 Cec05g1640 Cco05g1673 Clacu05g1626 Cmu05g1523 . Lsi05g00621 . Chy06g01797 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002898 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 1 1 2 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01310 Bma_Chr07 FPKM 3.55804 4.459224 44.942669 49.73568 95.595917 94.255821 94.264359 4.788036 3.680317 2.949662