Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01313 ATGGGCCGCAAAGCCGGAAGTTTAAGCGCTCTCTTCCGTTCTGCTGTTGAAACTTCCAAAACTGCCGCAGATGCAACCCTCAAATTCTACGTCTCCTCCGTTGATCCATTATCTCCCAGCATCTCCCTTTCTGAAGCCATAACCCAACGCTCACTGATGTCTTTTAAGTCTAAGAACTTTCCGACACTCCCTGACGATTCTCGGCGTTCGACCTTTGAGGAACCGGCGGCCTTGGATTCTGGTTGGTTATTTTTGTGTTTCGTACTTTTTTTTTCCTTTACAGAAGCAACATCAACTAGGTCATCGCAACCGTCGGAGGATCTAAATTCTTGGAAAAATGTTTTAGCCATACCATGGCTTTCAAATATGTCAAATAGTGATCTATCTTCACATCGTAAAAAAATATCACGTGAAAGGAAAGGAAAGTGGATTTTCAAGAGCACTCAACACAATCGGTTTAATAAATTAGTGGGGAATTGTGCTCAAAAGCTGGGGACAGGCACTACTATTGAGGTTTTTGGTAAATTAGGACGAGAAACTGGTGAGAAAGAATACAGTGCTCTAATAGGAATCTGCATGGACAAGGCTAGGACAACTAATGATGTGGAGGTTATTCTAGAACAGATTTCTAATGTATTTTTTCTTACTACGACTATGAAAGAACAAGGTTTTAAGTTAGAAGACAAAACTTATGGGCCAGTTCTTATGTTTTTTATTGAAATGGACATGTTGAAAGAGTTTCAACGTTTCGCTGAGCTTCTAAAAAATGGAAACCCAACTTCAGTTTCGAGGTTGGGTTACTATGAGATGTCGTTATTTGTCAGAACCAACGATACAATGAAAGTTCATGATCTCTGTAAAGATGTTTTAACCGAGGATGGGACAGATAAAACCAGTTTACGAGAAAACTACCTGTTAGCTCTATCTGAAAATGGTTGGAAGGAGGAGTTCTTGATGCTGTTGGATACTACAGACTTAAAGTTGTCATCAGTGGATTACGTTGCTAACATCTTTAAATCTTTTGGAAGGCTATCACTTGAAACTTTTGCAGAGAAACTCCTTTTGGAGTTCAAAACTAGCGAGCACGAAGAAGAGTATGTCTCAGACTTGATCCTTTGTTATGTTATCAACATTCCAAATTTAGCGATTGAGGATGCCATTTCAAAATTCAAGAACTTACATATCAAACTGGAGTCGAATCCATCGTCTGCATCTTATGAGAAGCTCATCATCTTTTGCTGTGATTTTCTTGAGGTGCATTTGGCTCTTGATCTTGCTAAAGAAATGTGTGAAGCAGGTTTCATGCCCTCAGAGGATACGTTACGCCCCATTTTAGATGCCAGCGGGGAAAGTTATAACTTTAACCTGGTTCATCAAATCTATTCGATCATATGTAAATATGACTTAAAGCCAAATGGTGAAACCTTCTGGAGAATGATAAATTTGTGTGTGAGAATGAAAGATTTTGATGGTGCATATCACATGCTCAAGGATTTGGAGAAAATGAACTTGACTCCTACAAGTGGCATGTACAATGCTATAATGGCAGGTTATTATCGAGAGAAAAACATTCATGGTGGACTGATGGTTCTGAAACAAATGGAACTTGCTCATGTAAAACCAGACTCTCAGACTTTCAGCTTGCTTCTCACCAACTGTTATCAAGAAGATGACATTAACAAGTATTATGAAGAATTGATGACTTCTGGAATTCAAGTTACTAAACAAATCTTCATGGCTCTTATAAATGCATATGCGAATTGTGGACAGTTTGAGAAGGCAAAACAGATAATATTAGACAAGAGAATCCCAGTAAAGAACTTGAATGAATTGAAAAGTGTTCTTGTAAATTCTCTCGCTTCATGTGGTCAAGTGGATGATGCTCTCAGTGTTTACAACGAAATCAAACAAGCTGGCTGCGATCTTGAGCCTAAAGCAGTTATAAGCCTCATGGTGCACCTTCAAACTGATGGGGAATTAAGTATAATGCTTCAGCTCCTTGATGAGTTGAAGGATCCTCGTTACTGGATTAATGGTTGCAGTAGAGTTATTTTGTATTGTGTATTACATAAGCACTTAAGTTCGGCCATTGATCTTCTGAGGCAACTCAAGAACAATTTTGGCGAAGATGAGCTTGGCATGGAAAGAATTTATGATGAGGTCTGCTTTTGTATTTTGTTCATTGCAGAGTTGGACCCAACATATTTAGAGATTGGCATGGAATTGCTACGAGTTATCAAGTGTGAATTTGGTCTGTCTCCTCCTCGAAAATGCCTCGATTTTCTTCTCAGCGCTTGTGTCAGTGCCAAAGACTTAGATAAGTCATGGTTGATTTGGAAGGAATATAAATCAGCTGGCCTCCCTTATAATGTTATAACCTTCTTAAGGATGTATCAAGCCCTCTTGGCATGTGGGGATCTTAAATCTGCAAAGATTTTGCTCGGTAAAATCCCGAAAGGCGACCCACATGTTCGAAGCATCATCCAACAATCTGAGGCAGTCTATCTCAAAGGAAACAAGAACAAGAATACTGCAAAAACCGAGGAATGA 2550 39.22 MGRKAGSLSALFRSAVETSKTAADATLKFYVSSVDPLSPSISLSEAITQRSLMSFKSKNFPTLPDDSRRSTFEEPAALDSGWLFLCFVLFFSFTEATSTRSSQPSEDLNSWKNVLAIPWLSNMSNSDLSSHRKKISRERKGKWIFKSTQHNRFNKLVGNCAQKLGTGTTIEVFGKLGRETGEKEYSALIGICMDKARTTNDVEVILEQISNVFFLTTTMKEQGFKLEDKTYGPVLMFFIEMDMLKEFQRFAELLKNGNPTSVSRLGYYEMSLFVRTNDTMKVHDLCKDVLTEDGTDKTSLRENYLLALSENGWKEEFLMLLDTTDLKLSSVDYVANIFKSFGRLSLETFAEKLLLEFKTSEHEEEYVSDLILCYVINIPNLAIEDAISKFKNLHIKLESNPSSASYEKLIIFCCDFLEVHLALDLAKEMCEAGFMPSEDTLRPILDASGESYNFNLVHQIYSIICKYDLKPNGETFWRMINLCVRMKDFDGAYHMLKDLEKMNLTPTSGMYNAIMAGYYREKNIHGGLMVLKQMELAHVKPDSQTFSLLLTNCYQEDDINKYYEELMTSGIQVTKQIFMALINAYANCGQFEKAKQIILDKRIPVKNLNELKSVLVNSLASCGQVDDALSVYNEIKQAGCDLEPKAVISLMVHLQTDGELSIMLQLLDELKDPRYWINGCSRVILYCVLHKHLSSAIDLLRQLKNNFGEDELGMERIYDEVCFCILFIAELDPTYLEIGMELLRVIKCEFGLSPPRKCLDFLLSACVSAKDLDKSWLIWKEYKSAGLPYNVITFLRMYQALLACGDLKSAKILLGKIPKGDPHVRSIIQQSEAVYLKGNKNKNTAKTEE 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48685369 48692585 + Bma026589.1 Bma07g01313 86450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01313 849 Pfam PPR repeat 614 640 IPR002885 -
Bma07g01313 849 Pfam PPR repeat 578 597 IPR002885 -
Bma07g01313 849 Pfam Pentacotripeptide-repeat region of PRORP 457 566 IPR033443 -
Bma07g01313 849 PANTHER OS02G0132600 PROTEIN 84 846 - -
Bma07g01313 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Bma07g01313 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Bma07g01313 849 Gene3D Tetratricopeptide repeat domain 566 729 IPR011990 GO:0005515
Bma07g01313 849 Gene3D Tetratricopeptide repeat domain 444 565 IPR011990 GO:0005515
Bma07g01313 849 Gene3D Tetratricopeptide repeat domain 734 833 IPR011990 GO:0005515
Bma07g01313 849 TIGRFAM PPR: pentatricopeptide repeat domain 510 542 IPR002885 -
Bma07g01313 849 TIGRFAM PPR: pentatricopeptide repeat domain 614 640 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01313 - - - jre:108983570 929.858
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01313 Bma-Chr7:48685369 Bma04g00096 Bma-Chr4:780018 2.63E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g434 . . . Bda09g00385 . Bpe08g01139 . . . . Cma01g01150 . . . . . Cpe02g00751 Bhi09g01943 . . . Hepe01g1308 . . . . . . . . . Cone6ag0086 . . . Lsi04g01240 . . . . . . . . . Bma07g01313 . . Cmo01g01202 . . . . Car16g00562 . . . . . . . . . Cla05g01536 Cam05g1643 Cec05g1649 Cco05g1687 Clacu05g1637 Cmu05g1532 Cre05g1642 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006190 1 2 0 1 1 1 1 1 1 1 1 1 1 0 2 2 1 1 1 1 1 5 1 2 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01313 Bma_Chr07 FPKM 1.579569 1.348714 4.485028 4.109294 2.11365 1.59222 1.860767 7.767978 8.09905 7.580696