Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01314 CCCATGGCGAAGGTGGCTCTTGGCTGTGAACCGGTGGTGGGTTCGTTGACTTCTTCCAAGAAGAAGGAGTACAGGGTCACCAACCGGCTCCAGGAAGGCAAGCGTCCACTTTATGCTGTCGTTTTTAATTTCATCGACTCCCGCTTCTTCAACGTAACGGTTTACCAATGTCTTGAGGGAGGTGTTATAGCTGTGTTGCAGTCTTACGTCGATGAAGATAAGGACGAGTCATTCTACACTGTGAGCTGGGCATGTAGTATCAATGGCATTCCATTTGTCATTGCTGGAGGAATCAATGGCATAGTTCGTGTCATTGATGCTGGGAGCGAAAAGATACACAAGTCCGATCTTGCTTATTTATTGAAGAGTTTTGTTGGTCATGGTGACTCGGTCAATGAAATCAGGACTCAACCATTGAAACCATCACTTATTGTCTCTGCAAGTAAAGATGAATCTGTTCGACTATGGAATGTTCATACGGGTGTGTGCATTCTGATATTTGCTGGAGCTGGAGGTCATCGGAATGAGGTTTTGAGTGTGGATTTTCATCCTTCAGACATTTATCGCATTGCTAGCTGTGGAATGGACAATACTGTAAAAATTTGGTCAATGAAAGAGTTTTGGACATATGTAGAGAAGTCTTTCACTTGGACAGATCTTCCATCAAAATTTCCCACTAAGTATGTGCAGTTTCCAGTTTTCATAGCTTCAGTCCATTCAAACTATGTTGACTGTAATAGATGGCTTGGTGATTTTATTCTCTCCAAGGTGAATAATTTCTTGTCCATTATGTCGTATTTGTCTTGCTTGATATATGGCCTTGTGCCATCAGGAAATAGGGAAGGAAAGATATTTGTTTGGGAACTTCAATCCAGCCCTCCTGTTCTCATTGCAAGATTGTCTCATGCTCAATCGAAATCGCCGATCAGACAGACGGCCATATCCTTTGATGGAAGCACCATTCTCAGCTGCTGTGAAGATGGGACCATCTGGCGTTGGGATGCTGCCACATCATCTTCTTGA 1023 43.4 PMAKVALGCEPVVGSLTSSKKKEYRVTNRLQEGKRPLYAVVFNFIDSRFFNVTVYQCLEGGVIAVLQSYVDEDKDESFYTVSWACSINGIPFVIAGGINGIVRVIDAGSEKIHKSDLAYLLKSFVGHGDSVNEIRTQPLKPSLIVSASKDESVRLWNVHTGVCILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKVNNFLSIMSYLSCLIYGLVPSGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAISFDGSTILSCCEDGTIWRWDAATSSS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48693687 48697163 + Bma026590.2 Bma07g01314 86451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01314 340 ProSitePatterns Trp-Asp (WD) repeats signature. 144 158 IPR019775 -
Bma07g01314 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 205 IPR001680 GO:0005515
Bma07g01314 340 PANTHER BNAA05G20190D PROTEIN 272 338 - -
Bma07g01314 340 PANTHER BNAA05G20190D PROTEIN 2 257 - -
Bma07g01314 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 166 IPR001680 GO:0005515
Bma07g01314 340 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Bma07g01314 340 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Bma07g01314 340 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Bma07g01314 340 PANTHER POLYCOMB PROTEIN 2 257 - -
Bma07g01314 340 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 205 - -
Bma07g01314 340 SUPERFAMILY WD40 repeat-like 78 335 IPR036322 GO:0005515
Bma07g01314 340 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 161 - -
Bma07g01314 340 Pfam WD domain, G-beta repeat 121 157 IPR001680 GO:0005515
Bma07g01314 340 Pfam WD domain, G-beta repeat 163 203 IPR001680 GO:0005515
Bma07g01314 340 Pfam WD domain, G-beta repeat 305 334 IPR001680 GO:0005515
Bma07g01314 340 Gene3D - 18 335 IPR015943 GO:0005515
Bma07g01314 340 SMART WD40_4 117 157 IPR001680 GO:0005515
Bma07g01314 340 SMART WD40_4 74 106 IPR001680 GO:0005515
Bma07g01314 340 SMART WD40_4 160 203 IPR001680 GO:0005515
Bma07g01314 340 SMART WD40_4 293 334 IPR001680 GO:0005515
Bma07g01314 340 PANTHER POLYCOMB PROTEIN 272 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01314 K11462 EED; polycomb protein EED - jre:108983540 579.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01314 Bma-Chr7:48693687 Bma01g02168 Bma-Chr1:78617039 1.97E-08 dispersed
Bma07g01314 Bma-Chr7:48693687 Bma13g00810 Bma-Chr13:31544563 1.42E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g432 . . . Bda09g00384 . Bpe08g01140 . . . . . . . Car09g00842 Sed04g3180 Cpe06g00746 . Bhi09g01944 Tan01g4508 Cmetu04g2640 . Hepe01g1309 . . . . . . . . . Cone6ag0087 Cone9ag0102 . . Lsi04g01241 . Chy04g01012 . . . . . . . Bma07g01314 . . . . . . . . . . . . . . . . . Cla05g01537 Cam05g1644 Cec05g1650 . Clacu05g1638 Cmu05g1533 Cre05g1643 . . . Cme04g00806
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011571 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01314 Bma_Chr07 FPKM 2.224224 2.534555 16.611042 21.119055 4.873138 3.343217 4.29921 0.9683 1.332695 1.439723