Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01315 ATGATTGAAATTGGGTTTGAAGAATTGGTTATTTTCGTGTTCTTGTTTGTGAGTATTTCGCTTTACTTGATTATGGGGATGACGAACGATGCAATTCAAAAGCAGCAAGGAGTGTTGCCTCGATCGGGTCGGGGCAATGGGCTCATATCGAACTCATTGCGTACCATATCGAGCTACCTAAAGATCGTCTCTTCCGGGGCTTCGACTGTAGCAAGGTCGGCTGCAACGGTGGCATCGTCGATCGTGGATAAGAATGAAGATGCCAATCGTGATCAGGTAAACTGGGTTGGGTTTGACGAGTTAGAGATTGAAGGAGATGTCAGCCGACGAGTTCTCCTTCTGGGTTATCGGTCTGGTTTCCAGGTTTGGGATGTTGAAGAAGCCAACAACGTCCGAGACTTAGTTTCCAGAAACGACGGTTCTGTATCGTTTATGCAAATGTTACCAATCCCATTAAAATCAAAAATGTTGAAAGATAAGTTCGAAGATAGTCGACCATTGCTAGTTCTTTGTACCGATGGTACGATAAACATTAATGGCAGCCATCAGGATCGATCAACCAGTCAAGGAACCATAGCGAATAGGAACTCTCAAGACCCATCAAATGTTAGCTTTTACTCATTGCGCTCTCAATCTTATATCCACGAGCTGAAGTTCCAGTCCGCTGTTTATTCGATAAGGTGCAGTTCCAGAGTTATAGCGATTTCTCAAGCGACTCAAATACATTGCCTCGATGCCATGACATTGGAGAGGCAATATTCGATTCTAACGAATCCGATAGTCTTGGGTTGTCCTAGTTTTGGAGGTCTAGGCTATGGACCTCTTGCCGTCATTGTGCGGGATATCGTCAGCAAAGATGTTCTCGCCCAGTTCAGGGCCCACAAGAGTCCAATCTCGGCATTATGCTTCGATCCCAGTGGGACCCTTTTAGTGACAGCATCTGTACAAGGCCATAACATAAATGTTTTCAAAATAATGCCTGGATTATCTGGAAATTCTTCTGATCCTGATTCTACTTCATCTTGTGTTCATCTTTACCGACTCCAACGGGGTTTAACTAATGCAGTCATACAAGATATCAGTTTTAGCAGTGATAGCAACTGGATTATGATCAGTTCCTCCAGAGGGACAAGCCATCTTTTTGCTATAAACCCAGTTGGTGGATCTGTGAATTTACAGTCTGGTGCTTTGACAAAGTCGCCAGTTCAAAGCTCGCAAAATTGTGTCTCTCAAATGCCTAATCAACAGATCCAACATGCATCTGGTCCTCCATTGACACTTTCTCCTATAAGCAGAATTCATAATGGAAATGGCTGGAGAGGCACTGTAACTGGGGCTGCAGCCGCCGCAACAGGCAGAGCAACCCCCCCATCAGGGGCTATTGCTTCGTGTTTTCATAAATGCAAAGATAATTCTTTGCATGTCGATAATGGGTCGATAAAATCTAAGCATCACCTTCTAGTTTTTTCACCTTCCGGTAATATGGTTCAATATGCATTACGAATTGGTTTAGATCAGACGGCTGTTGTGTCTGGTCCGAATTGTGCCTCTGAATCAGCTCTAGAGGGTGATTCTAGGCTAGCAGTGGAGGCAATTCAGAAGTGGAATATATGCCAAAAACAAAATCGGAGAGAGCGAGATGATAACATCGATATATATGGTGATAATGGCTCATACGGCAAGAAAATATTTACTGACAAAACAAGTGGAAATCCTCATTTTTCAGAGGATAGTGGTTCAATTACAGAAGAAAAGCATCATTTGTATATTGCAGAAGCTGAATTGCAGATGCATCAGGCTCTAAATCCATTGTGGGCAAAACCAGAGATCTACTTTCAATCAATCGTGAGCCATGATATCGATGTAGATAAAGTAAATCTTTCAAACGGGGAAACTGAGATAGAAAGGATACCGACTCGTATGATCGAAGCACGGTCAAAAGATCTGGTTCCTGTCTTTGACTACCTTCATTCTCCCAAGCCAGTGCAAATCAGGGTTTCTTCTACAGAGTACAATATTGCTCGACCATACCAGAAATCTTATCATCCCGAAAATGGCAATCATCCATGGAGGAGCTTCGCAGGTGCTCATCACTCTGCTGCTATAAATGGCACATCCATGGCTGAACTACAGAATGGAAAGGTGGAAACCAGCCAGAATAGTCCTAGAAGTGGATTAGAAACCGGGGACGCTGTAAATAACAATGACGGCCCTAAAACACCAACTCAGCTTGAGATTGTAAATAATATAGAGAGCTCGAAAATGAAGGCTCAACTCAAGCATGTAAATAATCATAATGGAAGTGTGAAGATGGAGAATCGCTTTGAAGACGAAGGCGACGAGTTTGATTAA 2352 43.07 MIEIGFEELVIFVFLFVSISLYLIMGMTNDAIQKQQGVLPRSGRGNGLISNSLRTISSYLKIVSSGASTVARSAATVASSIVDKNEDANRDQVNWVGFDELEIEGDVSRRVLLLGYRSGFQVWDVEEANNVRDLVSRNDGSVSFMQMLPIPLKSKMLKDKFEDSRPLLVLCTDGTININGSHQDRSTSQGTIANRNSQDPSNVSFYSLRSQSYIHELKFQSAVYSIRCSSRVIAISQATQIHCLDAMTLERQYSILTNPIVLGCPSFGGLGYGPLAVIVRDIVSKDVLAQFRAHKSPISALCFDPSGTLLVTASVQGHNINVFKIMPGLSGNSSDPDSTSSCVHLYRLQRGLTNAVIQDISFSSDSNWIMISSSRGTSHLFAINPVGGSVNLQSGALTKSPVQSSQNCVSQMPNQQIQHASGPPLTLSPISRIHNGNGWRGTVTGAAAAATGRATPPSGAIASCFHKCKDNSLHVDNGSIKSKHHLLVFSPSGNMVQYALRIGLDQTAVVSGPNCASESALEGDSRLAVEAIQKWNICQKQNRRERDDNIDIYGDNGSYGKKIFTDKTSGNPHFSEDSGSITEEKHHLYIAEAELQMHQALNPLWAKPEIYFQSIVSHDIDVDKVNLSNGETEIERIPTRMIEARSKDLVPVFDYLHSPKPVQIRVSSTEYNIARPYQKSYHPENGNHPWRSFAGAHHSAAINGTSMAELQNGKVETSQNSPRSGLETGDAVNNNDGPKTPTQLEIVNNIESSKMKAQLKHVNNHNGSVKMENRFEDEGDEFD 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48700524 48704390 + Bma026591.1 Bma07g01315 86452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01315 783 MobiDBLite consensus disorder prediction 712 742 - -
Bma07g01315 783 MobiDBLite consensus disorder prediction 759 783 - -
Bma07g01315 783 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 39 277 IPR045142 GO:0006914
Bma07g01315 783 SUPERFAMILY WD40 repeat-like 108 384 IPR036322 GO:0005515
Bma07g01315 783 SMART WD40_4 284 324 IPR001680 GO:0005515
Bma07g01315 783 SMART WD40_4 339 382 IPR001680 GO:0005515
Bma07g01315 783 Pfam Breast carcinoma amplified sequence 3 422 651 IPR022175 -
Bma07g01315 783 Gene3D - 188 498 IPR015943 GO:0005515
Bma07g01315 783 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 277 751 - -
Bma07g01315 783 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 39 277 - -
Bma07g01315 783 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 277 751 IPR045142 GO:0006914
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01315 - - - nau:109222279 570.466
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01315 Bma14g00356 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01315 Bma-Chr7:48700524 Bma09g00704 Bma-Chr9:45109926 1.30E-43 dispersed
Bma14g00356 Bma-Chr14:4351306 Bma07g01315 Bma-Chr7:48700524 1.58E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g429 . . Bda07g00339 Bda09g00383 . Bpe08g01141 . . . . Cma01g01151 . . . Sed07g2655 . Cpe02g00750 Bhi09g01945 Tan01g4507 Cmetu04g3052 . Hepe01g1310 Mch11g1153 . . . . . . . . . . . . Lsi04g01243 . Chy04g01014 . . . . . . . Bma07g01315 Bma14g00356 . Cmo01g01204 Cmo09g00922 . . . . . . . . . . . . . Cla05g01538 Cam05g1645 Cec05g1651 Cco05g1688 Clacu05g1639 Cmu05g1534 Cre05g1644 . . . Cme04g00804
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005697 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01315 Bma_Chr07 FPKM 13.013333 12.614542 5.385717 4.764023 40.357468 36.637119 39.053318 0.264475 0.0 0.188366