Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01321 GCAATGGAGTGCGTACTCTGCGGACGAAGGGCGATGATGTACTGCGAGTCGGATCTAGCGATGTTGTGCTGTGACTGCGATGAGAAGGTTCACGGCGCTAATTTTCTCGTCGCGAAGCACCACCGGAGCCTTCTGTGCTACGCTTGTCAGTCTCTGACGCCGTGGACTGCTTCTGGACCCAAGCTCACGCCGACTGTGTCTGTGTGTGAGGGATGCGTCCATTCTCATAGAAGGAAGTGCGACCGCGGTACAAATCAGGAGAGCCAAGGATGTAACGAGGTGGACGATGATGGCAGCTATGAAGTAAGTGGGAGCGAAGGAGGGTCTGAGGAAGAGGAAGAGGAAGAGGACGATACTGAGCACGAGGACGAGGATGGAGAAAATCAAGTCGTGCCCTGGTCTCATGCTTCTTCTCCGCCGCCGCCATCGCCCCCGGCGGCGAGTTCGAGCAGCGAGGGCTTTTCTGCTGCCGGAGGAGCCAAGAAGACGTTGAAGCGGAAGGGAGAAACAGGAGATGCTTCGGACTCCGATGACGAAATACGAAGCTCCTCTTCCCAACAGGGACGAGAAACGAGTGACGAATCATCTTGTCCAACCTCCTTCCGATCGCGGAAGCATCTCCGGCCGACAATTGACTCGGATCAACTACCGACCAATCAAGATCTCGAAAAACTAAGATCGACGGACAACATGAACTCAATCAAGCGGCTCCAAACCACCATGGCAACCGACTGTAATGAAGCATCAAGTAAAAACGATTCTTGGGATGAGCAATTTCAGCAGAGATCAAAGCCATTAATTCCGAATCCGACCCAATTCCTTTACCGCCATCCTAACCATACAGATAAAAAAAATACAGCGAGGTAG 867 52.83 AMECVLCGRRAMMYCESDLAMLCCDCDEKVHGANFLVAKHHRSLLCYACQSLTPWTASGPKLTPTVSVCEGCVHSHRRKCDRGTNQESQGCNEVDDDGSYEVSGSEGGSEEEEEEEDDTEHEDEDGENQVVPWSHASSPPPPSPPAASSSSEGFSAAGGAKKTLKRKGETGDASDSDDEIRSSSSQQGRETSDESSCPTSFRSRKHLRPTIDSDQLPTNQDLEKLRSTDNMNSIKRLQTTMATDCNEASSKNDSWDEQFQQRSKPLIPNPTQFLYRHPNHTDKKNTAR 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48761327 48762331 + Bma026597.1 Bma07g01321 86458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01321 288 MobiDBLite consensus disorder prediction 162 184 - -
Bma07g01321 288 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Bma07g01321 288 SMART bboxneu5 1 45 IPR000315 GO:0008270
Bma07g01321 288 PANTHER OS08G0178800 PROTEIN 3 225 - -
Bma07g01321 288 MobiDBLite consensus disorder prediction 212 232 - -
Bma07g01321 288 CDD Bbox1_BBX-like 4 45 - -
Bma07g01321 288 MobiDBLite consensus disorder prediction 106 125 - -
Bma07g01321 288 MobiDBLite consensus disorder prediction 80 232 - -
Bma07g01321 288 MobiDBLite consensus disorder prediction 266 288 - -
Bma07g01321 288 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01321 - - - bhj:120086748 192.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01321 Bma-Chr7:48761327 Bma12g00772 Bma-Chr12:34978472 2.12E-21 dispersed
Bma07g01321 Bma-Chr7:48761327 Bma02g01344 Bma-Chr2:55908876 8.42E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma07g01321 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000776 4 2 3 3 3 3 3 3 3 3 3 3 4 3 2 4 3 6 4 3 3 3 2 2 2 3 2 3 3 2 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01321 Bma_Chr07 FPKM 41.081921 39.637543 55.983391 51.666714 50.18317 63.527023 39.031563 55.270771 55.745758 57.708519