Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01329 AAGTTCAATATGCCTTCAGCTCAAGATCCATTCTACGTTGTGAAGGATGAAATCCAAGAATCTATTGATAAGTTGCAACAAACTTTTCACCGATGGGAGCTCATTTCTGATTTAGGAGAGCGATCAAAACTTACAAATGAGCTGCTTGCTAGCTGTGATAGTATTGAGTGGCAGATCTTCCACTCTATCAAGTACTTTTTGATGGTTATGAGTAAGTCTATGATTCTTAGCATGAGAGCAATTAAAAAAATAGATGAAAAAACAGTAGATGAATTAGACAAGGCTATAGCTGTTGCTGTCAGAGATCCGGCTTGGTATGGAATTGATGAAGTGGAGCTTGAAAAACGGAGGAGATGGACTAGTACAGCTCGCGCTCAGGTTGGCTCTGTGAAAAAGGTAGTGAAAACTGGGAAGGAGCTGAATGGTATTGGCAATACGACCACAAATATGAATGGAATACGTCGAGAACTGTTGAGACTGCCTAATCCTAATGAAAGAGACGGGGCCAACCAGTACGATGTTCAAGACAATGATGATTTCATAGCTTCGGAATCAGATCGGCAGTTGCTTCTCATAAAGCGACAAGATGAAGAATTGGATGAGCTCAGTGCCAGCGTGGAGAGAATTGGAGGAGTTGGGCTAACAATACATGATGAACTCCTTTCCCAGGAGAAAATTATCGATGAATTAGGAGCGGAACTGGATAGTACATCAAATCGTCTTGACTTTGTTCAGAAAAAAGTAGCCGTGGTCATGAAGAAGGCTGGTATTAAGGGGCAGATAATGATGATTGCGTTTTTAGTGGTTTTGTTCATAATTCTCTTTGTGCTGGTGTTTTTAACTTAG 846 40.78 KFNMPSAQDPFYVVKDEIQESIDKLQQTFHRWELISDLGERSKLTNELLASCDSIEWQIFHSIKYFLMVMSKSMILSMRAIKKIDEKTVDELDKAIAVAVRDPAWYGIDEVELEKRRRWTSTARAQVGSVKKVVKTGKELNGIGNTTTNMNGIRRELLRLPNPNERDGANQYDVQDNDDFIASESDRQLLLIKRQDEELDELSASVERIGGVGLTIHDELLSQEKIIDELGAELDSTSNRLDFVQKKVAVVMKKAGIKGQIMMIAFLVVLFIILFVLVFLT 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48806264 48808773 + Bma026605.1 Bma07g01329 86466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01329 281 Pfam SNARE domain 226 277 IPR000727 -
Bma07g01329 281 SMART tSNARE_6 184 251 IPR000727 -
Bma07g01329 281 CDD SNARE_Qc 192 249 - -
Bma07g01329 281 SUPERFAMILY t-snare proteins 86 132 IPR010989 GO:0016020|GO:0016192
Bma07g01329 281 Gene3D - 77 137 - -
Bma07g01329 281 Gene3D - 5 62 - -
Bma07g01329 281 Coils Coil 227 247 - -
Bma07g01329 281 Gene3D - 196 258 - -
Bma07g01329 281 PANTHER SYNTAXIN PROTEIN 84 280 - -
Bma07g01329 281 PANTHER SYNTAXIN PROTEIN 4 59 - -
Bma07g01329 281 SUPERFAMILY SNARE fusion complex 188 251 - -
Bma07g01329 281 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 189 251 IPR000727 -
Bma07g01329 281 Pfam Syntaxin 6, N-terminal 9 59 IPR015260 GO:0016020|GO:0048193
Bma07g01329 281 Pfam Syntaxin 6, N-terminal 86 131 IPR015260 GO:0016020|GO:0048193
Bma07g01329 281 PANTHER SYNTAXIN 84 280 IPR045242 -
Bma07g01329 281 PANTHER SYNTAXIN 4 59 IPR045242 -
Bma07g01329 281 SUPERFAMILY t-snare proteins 8 59 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01329 Bma-Chr7:48806264 Bma14g00333 Bma-Chr14:4169954 6.45E-149 dispersed
Bma07g01329 Bma-Chr7:48806264 Bma07g01292 Bma-Chr7:48531868 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01329 K08500 - qsu:112025744 330.102