Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01366 ATGTCAGATCCAGGGTTGGAAGGAAGTCAACCTGTGGATCTCAAGAAGCACCCTTCGGGGATTGTACCTACCCTCCAGAATATTGTGTCAACGGTGAATTTAGACTGCAAGTTGGATCTAAAGGCCATTGCTCTTCAAGCTCGCAATGCTGAGTACAATCCCAAGGCAAGTGATCGGTTTGCTGCTGTTATTATGCGGATAAGGGAACCGAAGACCACAGCATTAATTTTTGCTTCTGGGAAGATGGTTTGTACTGGAGCGAAGAGTGAACAACAGTCAAAATTGGCAGCACGAAAGTATGCCCGAATTATTCAGAAGCTTGGTTTCCCAGCAAAATTTAAGGATTTCAAAATCCAGAACATTGTAGGTTCCTGCGATGTCAAATTTCCCATAAGGCTTGAGGGTCTTGCTTATTCTCATGGTGCTTTTTCTAGTTACGAACCAGAACTCTTCCCGGGCTTGATTTATAGGATGAAACAACCAAAGATAGTGCTGCTCATCTTTGTTTCAGGAAAAATTGTTCTTACTGGAGCTAAGGTAAGAGATGAAACTTACAAAGCATTTGAGAACATATATCCAGTTCTTACAGAGTTCAGGAAGAATCAGCAATGGTAA 615 42.11 MSDPGLEGSQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASDRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYKAFENIYPVLTEFRKNQQW 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49295260 49297814 - Bma026647.1 Bma07g01366 86503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01366 204 PANTHER TATA-BOX-BINDING PROTEIN 1 1 203 - -
Bma07g01366 204 CDD TBP_eukaryotes 22 198 IPR033710 GO:0003677|GO:0006352
Bma07g01366 204 SUPERFAMILY TATA-box binding protein-like 115 201 - -
Bma07g01366 204 Gene3D - 30 118 IPR012295 -
Bma07g01366 204 PRINTS Transcription initiation factor TFIID signature 118 134 IPR000814 GO:0003677|GO:0006352
Bma07g01366 204 PRINTS Transcription initiation factor TFIID signature 25 40 IPR000814 GO:0003677|GO:0006352
Bma07g01366 204 PRINTS Transcription initiation factor TFIID signature 142 157 IPR000814 GO:0003677|GO:0006352
Bma07g01366 204 PRINTS Transcription initiation factor TFIID signature 161 177 IPR000814 GO:0003677|GO:0006352
Bma07g01366 204 PRINTS Transcription initiation factor TFIID signature 49 68 IPR000814 GO:0003677|GO:0006352
Bma07g01366 204 SUPERFAMILY TATA-box binding protein-like 21 117 - -
Bma07g01366 204 Gene3D - 26 197 IPR012295 -
Bma07g01366 204 PANTHER TATA-BOX BINDING PROTEIN 1 203 IPR000814 GO:0003677|GO:0006352
Bma07g01366 204 Hamap TATA-box-binding protein [tbp]. 19 201 IPR000814 GO:0003677|GO:0006352
Bma07g01366 204 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 115 198 IPR000814 GO:0003677|GO:0006352
Bma07g01366 204 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 23 107 IPR000814 GO:0003677|GO:0006352
Bma07g01366 204 ProSitePatterns Transcription factor TFIID repeat signature. 146 195 IPR030491 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01366 K03120 TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein - qsu:112038691 382.874
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01366 Bma14g00738 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00738 Bma-Chr14:8161506 Bma07g01366 Bma-Chr7:49295260 1.19E-148 wgd
Bma14g00827 Bma-Chr14:9188246 Bma07g01366 Bma-Chr7:49295260 3.40E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g17 . Blo03g01400 . . . . Bma14g00738 Bma07g01366 Cmo10g00832 Cmo11g00778 Cma10g00805 . . . . . Cpe18g00275 . . . . . . . . . . . . . . . . . . Lsi06g00382 . . . . . Bda07g00776 Bda09g00343 . Bpe11g00950 . . . . . Cma11g00770 . . . . Cpe04g00990 . . . . . . . Cla03g01408 Cam03g1488 Cec03g1525 . Clacu03g1510 Cmu03g2067 Cre03g1740 . Csa01g03036 Chy02g01316 Cme02g00348
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002633 2 2 2 3 2 2 2 2 2 1 2 2 2 1 1 2 2 1 2 3 1 2 1 2 3 3 1 2 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01366 Bma_Chr07 FPKM 11.058355 13.213999 3.737142 2.937248 45.7841 44.01347 44.147789 16.642242 13.99483 13.692582