Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01367 GTAAAACTGCCAGCAATGGAGGGAGTCGTTACGGAATTGAAGCCGAAGACGAAGATCGTTTGCACTTTGGGGCCGGCGTCCAGGTCCGTCCTGATGATCGAGAAGCTTCTGAGGGCTGGGATGAACGTCGCGCGTTTCAACTTTTCACACGGATCGCATGCCTACCACCAGGAGACGCTTGATAACCTAAGGGCCGCGATGGAAAATACTGGAATTCTCTGCGCCGTAATGCTTGATACCAAGGGGCCGGAGATTCGAACTGGATTCTTGAAAGACAATAAACCGATTCAACTACAACAAGGCCAGGAGATAACCATATCGACCGACTACAGCCTAGAAGGCGATGAGAATACGATTTGCATGAGCTACAAGAAACTGGCCGAGGATGTAAAACCAGGGAGTGTGATACTCTGTGCAGATGGAACAATTTCGTTCTCGGTTTTATCTTGTGACCCGGATTTGGGTTTGGTCCGATGTCGATGTGAGAATTCTGCTGTTCTTGGCGAGAGGAAGAATGTTAATCTCCCCGGAGTTGTAGTAGATCTTCCGACTTTGACTGAGAAGGATAAGGAAGATATTTTACAGTGGGGTGTTCCTAATCAGATCGATATGGTTGCTCTTTCTTTTGTTCGGAAGGGTTCGGATCTTGTAGAGGTTCGGGAGCTGCTCGGAAATCATTCGAAGACTATCCTTCTTATGTCGAAGGTTGAAAATCAAGAAGGTGTTGCGAATTTTGATGACATTCTGGCGAATTCGGATGCGTTCATGGTGGCAAGAGGCGATCTTGGAATGGAAATTCCGATCGAGAAGATTTTTCTGGCCCAAAAAGTGATGATATACAAGTGTAACATCCATGGAAAACCAGTTGTGACGGCGACCCAAATGTTGGAATCGATGATCAAGTCTCCCCGGCCGACCAGAGCTGAAGCTACCGATGTGGCGAATGCAGTTCTGGATGGAACCGACTGTGTGATGCTTAGTGGGGAAACGGCTGCAGGAGCTTACCCGGAACTTGCAGTGAAGACCATGGCGAAGATATGTATAGAAGCTGAAAGTACACTCAACCATGGAGATGTCTTCAAAAGGATTATGGAACATTCACCGGTGCCGATGAGCCCGTTGGAGAGCTTGGCTTCATCCGCCGTCAGAACGGCAAACTCGGCCAAAGCCGCTCTCATTCTGGTCCTAACCCGAGGAGGAAGCACGGCAAAACTGGTCGCGAAATACCGACCCGGGATGCCTATTTTGTCTGTTGTCGTCCCGGAGATCAAAACAGATTCCTTTGACTGGTCGTGTAGCGATGAATCTCCGGCGAGGCACAGCTTGATATTCCGGGGACTGGTGCCATTTCTCAGCACGGCGTCGGCCAAGGCTTCTCATTCGGAGACCACGGAAAAGGCGATAGAGTTTGCCATCCAACACGCAATGACAAAGGGGCTGTGCAAGGCCGGCGATTCCGTGGTGGCCCTGCACCGCATCGGAGCCGCATCGGTGATCAAGATCCTGACCGTCAAGTGA 1518 50.2 VKLPAMEGVVTELKPKTKIVCTLGPASRSVLMIEKLLRAGMNVARFNFSHGSHAYHQETLDNLRAAMENTGILCAVMLDTKGPEIRTGFLKDNKPIQLQQGQEITISTDYSLEGDENTICMSYKKLAEDVKPGSVILCADGTISFSVLSCDPDLGLVRCRCENSAVLGERKNVNLPGVVVDLPTLTEKDKEDILQWGVPNQIDMVALSFVRKGSDLVEVRELLGNHSKTILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIHGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVKTMAKICIEAESTLNHGDVFKRIMEHSPVPMSPLESLASSAVRTANSAKAALILVLTRGGSTAKLVAKYRPGMPILSVVVPEIKTDSFDWSCSDESPARHSLIFRGLVPFLSTASAKASHSETTEKAIEFAIQHAMTKGLCKAGDSVVALHRIGAASVIKILTVK 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49299899 49302071 + Bma026648.1 Bma07g01367 86504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01367 505 Gene3D - 351 492 IPR036918 -
Bma07g01367 505 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 15 356 IPR015813 GO:0003824
Bma07g01367 505 PANTHER PYRUVATE KINASE 9 505 - -
Bma07g01367 505 SUPERFAMILY PK beta-barrel domain-like 83 182 IPR011037 -
Bma07g01367 505 SUPERFAMILY PK C-terminal domain-like 339 504 IPR036918 -
Bma07g01367 505 Gene3D - 16 350 IPR040442 -
Bma07g01367 505 PANTHER PYRUVATE KINASE 9 505 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma07g01367 505 CDD Pyruvate_Kinase 15 504 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma07g01367 505 Pfam Pyruvate kinase, alpha/beta domain 375 500 IPR015795 -
Bma07g01367 505 Pfam Pyruvate kinase, barrel domain 16 359 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma07g01367 505 TIGRFAM pyruv_kin: pyruvate kinase 16 493 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma07g01367 505 PRINTS Pyruvate kinase family signature 72 88 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma07g01367 505 PRINTS Pyruvate kinase family signature 284 308 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma07g01367 505 PRINTS Pyruvate kinase family signature 309 327 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma07g01367 505 PRINTS Pyruvate kinase family signature 259 283 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma07g01367 505 PRINTS Pyruvate kinase family signature 328 344 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma07g01367 505 PRINTS Pyruvate kinase family signature 232 258 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma07g01367 505 PRINTS Pyruvate kinase family signature 202 216 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma07g01367 505 ProSitePatterns Pyruvate kinase active site signature. 230 242 IPR018209 GO:0004743|GO:0006096
Bma07g01367 505 Gene3D - 83 183 IPR015806 GO:0004743|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01367 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101216029 911.753
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01367 Bma14g00739 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00478 Bma-Chr3:3685636 Bma07g01367 Bma-Chr7:49299899 0 dispersed
Bma04g01607 Bma-Chr4:51996539 Bma07g01367 Bma-Chr7:49299899 2.52E-129 dispersed
Bma07g01367 Bma-Chr7:49299899 Bma08g00836 Bma-Chr8:46207391 0 dispersed
Bma05g01085 Bma-Chr5:49583585 Bma07g01367 Bma-Chr7:49299899 5.40E-74 transposed
Bma14g01984 Bma-Chr14:43177302 Bma07g01367 Bma-Chr7:49299899 4.74E-35 transposed
Bma14g00739 Bma-Chr14:8190402 Bma07g01367 Bma-Chr7:49299899 0 wgd
Bma14g00829 Bma-Chr14:9206881 Bma07g01367 Bma-Chr7:49299899 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g13 . . . . . . Bma14g00739 Bma07g01367 . . . . . . . Cpe05g00567 . . . . . . . . Cla02g02367 Cam02g2518 Cec02g2565 Cco02g2594 Clacu02g2492 Cmu02g2423 Cre02g2741 . Cone5ag1304 Cone18ag0007 Cone11ag1586 . . Chy05g00007 Cme05g00009 . . Bda07g00775 Bda09g00342 . Bpe11g00949 . . Sed01g3428 Cmo02g01195 Cmo20g00006 Cma02g01161 Cma20g00006 Car02g00961 Car20g00004 Cpe16g00942 . Bhi10g00488 Tan07g0564 Cmetu05g1641 . Hepe08g0007 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001167 5 3 3 5 4 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 1 2 2 2 3 2 4 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g01367 Bma_Chr07 FPKM 57.452595 60.655624 73.135796 78.892723 39.673706 36.408493 40.857578 110.340385 111.447876 114.811478