Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01373 ATGGCTGGGGGATCTTCCGATCAGAACTCGAACATTCCGATTCCTCCGTCCGATTCTCCCACCTCTGCTGACTTCAATACCGATCAGCTTCCTTTCACTAGCCACACATCCAACAACTACTCTGACGAAGAGGAGGCGGCGGTCGATCCTAATATTATTCTTGATGAGCCAAATGATGCTGAAGAAGAAGCCGAGGAGGACGGAGAGGATCTCTACAACGATAATTTTATGGACGATTACCGGAGGATGGAGGAACATGACCAATATGAATCCTTGGGTCTCAATGACTCTGTGGAAGACGAGAGAGATTTGGATCAAATTATGGAAGATCGAAGGGCTGCTGAATTGGAGCTCGACGCACGAGATGGTCGCTCCACCCAGCGCAAACTTCCACAGCTACTTCATGATAATGACTCTGAGGATGACAACTCTAGGCCGCCAAAGAGAGCTAGGGCTTCTAGGCCTTCAGCTGCAGCAAGAAGTTATGATGATGTTGATGGAATGCAAAGTTCACCTGGAAGGTCACAGCAAGATCATTCTAGAGACGATATCCCCATGACTGATCATTCAATTGATGAACAGTATGAGGATGAAGATGACGATGAAGGTGAGTTTGAAATGTATAGGGTCCAAGGAACTCTAAGAGAGTGGGTAACTAGGGATGAAGTTCGTCGCTTCATTAGCAAGAAATTCAAAAATTTCTTAGAAACATATGTGAATCCAAAAAATGGACATTCTGAGCTCGTATACATGCGGCTCATAAATGAGATGGTGTTGGCTAACAGTAGTAGCTTGGAGGTAGATTATAAGCAGTTTATTTATGTACATCCAAATATTGCCATCTGGTTGGCTGATGCCCCACAATCTGTCCTAGAAGTCATGGAAGAAGTTGCAAAGAAGGTAGTATTTGACATACATCCTAATTACAAGAGTATTCACCAGAAGATCTATGTGAGGATAACCAACTTACCTGTATATGATCAGATTCGAAACATTAGGCAAATCCACTTGAATACCATGATTCGTATTGGAGGGGTTGTGACTCGCCGATCTGGTGTTTTTCCCCAGCTGCAGCAGGTCAAATATGATTGCAACAAATGTGGGGCAATATTAGGGCCCTTTTTCCAGAATTCGTATTCAGAAGTCAAGGTTGGTTCTTGCCCTGAATGCCAATCAAAAGGGCCATTCACTGTTAATGTTGAACAGACTTTATACAGGAACTACCAGAAGCTTACGCTGCAAGAAAGCCCTGGTATTGTTCCTGCAGGTCGTCTTCCAAGATACAAGGAAGTGATATTGTTGAATGATCTGATTGATTGTGCCCGCCCTGGGGAAGAAATTGAAGTCACAGGAATTTATTCAAATAACTTCGATTTATCTTTAAATACAAAGAATGGATTTCCTGTCTTTGCTACTGTTGTTGAAGCAAACTACGTTACCAAGAAGCAAGACCTCTTCTCTGCTTACAAACTTACTCAGGAAGACAAAGAAGAGATTGAAAAGCTTGCTAAAGATCCAAGAATTGGAGAAAGGATTATCAAATCTATTGCTCCATCAATATATGGTCATGAGGATATCAAAACGGCCATAGCTCTTTCTATGTTCGGTGGTCAAGAGAAGAATGTTGAAGGGAAACATCGGTTAAGAGGTGACATCAATGTACTTCTTCTTGGAGATCCAGGAACCGCAAAGTCACAATTTCTGAAATATGTTGAAAAGACTGGTCAAAGAGCAGTGTACACCACAGGCAAAGGAGCTTCTGCTGTTGGACTCACAGCAGCTGTGCACAAGGACCCAGTTACAAGGGAATGGACCCTTGAGGGAGGTGCCCTTGTTTTGGCTGATAAAGGAATTTGTCTTATTGACGAGTTTGACAAGATGAATGATCAAGATCGGGTGAGTATCCATGAAGCAATGGAGCAGCAAAGCATTAGTATATCGAAGGCTGGGATAGTCACTTCTCTTCAAGCACGTTGTGCCGTCATTGCTGCAGCTAATCCCATCGGAGGAAGGTATGATTCCTCAAAAACAATTACCCAGAATGTTGAGCTGACTGATCCTATCATTTCTCGTTTTGACATCCTATGTGTAGTGAAGGATGTCGTAGATCCTGTTATAGACGAGATGCTTGCCAAGTTTGTTGTTGATAGTCATTTTAAATCACAGCCTAAGGGTTCTAATGTTGAGGATAAGTCCAATATTAAGGAGTCTGAGGATGACATGCAAGACTCTGATAGGCCAGTTGATGTTGAGGTGCTGTCTCAGAATCTGCTTAAAAAATATATAACTTATGCAAAGTTAAATATTTTTCCAAGGTTGCATGATGCTGATATGGATAAGCTCACACACGTTTATGCTGAGCTGCGGCGCGAATCATCTCACGGACAAGGAGTTCCAATTGCAGTGAGACACATAGAATCAATGATACGGATGTCTGAGGCGCACGCAAGAATGCACCTCAGGCAGCATGTTACACAAGAAGATGTGGATATGGCAATTCGAGTACTTCTTGATTCGTTCATTTCAACACAAAAATTTGGGGTTCAGAAAGCACTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAAAAGGATTACAATGAACTACTCCTGCATCTCCTTCGTGAGCTCGTGAAGAATGCATTGCACTCAAAGGAAATAGTTTCCGGTTCTGTTGCCGGACTTACCCATATTGATGTGAAAGTAGAGGATTTGCTAACCAAGGCACAGGAACACGAAATATATGATCTTAATCCTTTTTTCTCAAGTACTCATTTTTCTAGAGCCAACTTTACGTTGAACGAAGAACATGGAGTAATTTACCATCAACTTGCGAGATAA 2841 42.2 MAGGSSDQNSNIPIPPSDSPTSADFNTDQLPFTSHTSNNYSDEEEAAVDPNIILDEPNDAEEEAEEDGEDLYNDNFMDDYRRMEEHDQYESLGLNDSVEDERDLDQIMEDRRAAELELDARDGRSTQRKLPQLLHDNDSEDDNSRPPKRARASRPSAAARSYDDVDGMQSSPGRSQQDHSRDDIPMTDHSIDEQYEDEDDDEGEFEMYRVQGTLREWVTRDEVRRFISKKFKNFLETYVNPKNGHSELVYMRLINEMVLANSSSLEVDYKQFIYVHPNIAIWLADAPQSVLEVMEEVAKKVVFDIHPNYKSIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTLYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYSNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALSMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCAVIAAANPIGGRYDSSKTITQNVELTDPIISRFDILCVVKDVVDPVIDEMLAKFVVDSHFKSQPKGSNVEDKSNIKESEDDMQDSDRPVDVEVLSQNLLKKYITYAKLNIFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLHLLRELVKNALHSKEIVSGSVAGLTHIDVKVEDLLTKAQEHEIYDLNPFFSSTHFSRANFTLNEEHGVIYHQLAR 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49350150 49355488 + Bma026656.1 Bma07g01373 86510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01373 946 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 146 939 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma07g01373 946 ProSitePatterns MCM family signature. 617 625 IPR018525 GO:0003677|GO:0005524|GO:0006260
Bma07g01373 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 843 IPR027417 -
Bma07g01373 946 ProSiteProfiles MCM family domain profile. 508 714 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g01373 946 Pfam MCM AAA-lid domain 757 840 IPR041562 -
Bma07g01373 946 MobiDBLite consensus disorder prediction 720 746 - -
Bma07g01373 946 Pfam MCM N-terminal domain 229 322 IPR027925 -
Bma07g01373 946 PANTHER DNA HELICASE 146 939 - -
Bma07g01373 946 SMART mcm 325 841 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma07g01373 946 MobiDBLite consensus disorder prediction 723 742 - -
Bma07g01373 946 PRINTS Mini-chromosome maintenance (MCM) protein family signature 549 564 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g01373 946 PRINTS Mini-chromosome maintenance (MCM) protein family signature 637 650 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g01373 946 PRINTS Mini-chromosome maintenance (MCM) protein family signature 688 696 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g01373 946 PRINTS Mini-chromosome maintenance (MCM) protein family signature 661 673 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g01373 946 PRINTS Mini-chromosome maintenance (MCM) protein family signature 609 623 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g01373 946 MobiDBLite consensus disorder prediction 55 73 - -
Bma07g01373 946 Pfam MCM OB domain 328 455 IPR033762 -
Bma07g01373 946 MobiDBLite consensus disorder prediction 1 202 - -
Bma07g01373 946 Pfam Mini-chromosome maintenance protein 2 43 200 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Bma07g01373 946 Gene3D - 488 863 IPR027417 -
Bma07g01373 946 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 338 355 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Bma07g01373 946 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 457 468 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Bma07g01373 946 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 361 373 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Bma07g01373 946 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 396 410 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Bma07g01373 946 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 472 483 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Bma07g01373 946 SUPERFAMILY Nucleic acid-binding proteins 230 477 IPR012340 -
Bma07g01373 946 Gene3D - 356 406 - -
Bma07g01373 946 CDD MCM2 511 839 - -
Bma07g01373 946 MobiDBLite consensus disorder prediction 74 149 - -
Bma07g01373 946 MobiDBLite consensus disorder prediction 176 191 - -
Bma07g01373 946 Pfam MCM P-loop domain 496 718 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g01373 946 Gene3D - 221 325 - -
Bma07g01373 946 MobiDBLite consensus disorder prediction 1 44 - -
Bma07g01373 946 Gene3D - 329 454 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01647 Bma-Chr4:52347896 Bma07g01373 Bma-Chr7:49350150 1.04E-56 dispersed
Bma07g01373 Bma-Chr7:49350150 Bma01g00291 Bma-Chr1:2423821 3.48E-94 dispersed
Bma07g01373 Bma-Chr7:49350150 Bma03g00566 Bma-Chr3:4689080 8.64E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01373 K02540 - vvi:100266163 1565.82