Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01396 ATGCAGTCTGAATCTGAAACCAAAGATAAAGTAGAACCGAATGCACATAACATCCCACCAGCCAATAGTTACTTTGAACCTTGGTGGCGTGCTGTTGAATACAATTCAATTCCCCCACACTCGACTGTGGGTAATGCTCCCAACGCTTCTTCAATGGAATGCCTAGATAATTGTTCAGAGTCCAGTGATGACCGATCGATCTCTAATGATGAGCATATTGATGATGATGATGATGATGCTGACAAACAATCACAACAAATGGCTAAATCTGCACAAAATGTCCAGCAAGATGCACCAAATGGACCACATGGAGCATCCTCGGGGACGACAGTGCATTGTCCCTGTGTGGCGCAACCTCCATCACTTGAACTAGTTGGACATTCTATTGCATGTGCTCCGAATCCTTATCAGGATCCATATTATGGAGGAATGATGATGGCTTATGGACATCAACCGTTGAGTTACCCTGCTGTTCTTGGAATGCCGCATGCTAGAATGCCTTTACCTCATGACATGATACAAGAGCCAGTTTTTGTCAATGCCAAGCAATACCAAGGGATTTTAAGAAGAAGACAGGCTCGTGCTAAAGCTGAAATTGAAAAGAAGCTGATAAAAAATAGGAAGTGGAGAGAAATATACACTCGTGACTATGGACTTAAAGTTTTTTCTTTTGCTTTAGTTGCATCTAAATTTGATCATTTATTACAGCCATATCTTCATGAATCTCGGCATAAGCATGCAATGCGAAGAGTAAGGAGTATTGGAGGGCGTTTTGCCAAGAAAATGGACGGCGGATCTGCCAACTGCACGAGCAAAGAAAAAGGAACAGACCCAGTTCCAGCCAGGTCCTCGCAGTCAGCTTGTACATCAGCTTCAGCTTCAGCTTCGGAACTCTCAGCTGCTGACGGGAGTGAAAGGTGGACGGGCACCAATGGTCAACAAGCCGCCAGCCGGCCCCAACAATATGAAACCCAAAACATCATTAACCACCAAATTCAGAGTCACAATGGCTTTTTTGGTGAAAATGGGGAGGAAGGAGACTGCTCAGGCCAAGAACTAGGAAGAATTTCCCGGGACAAAGCTTCACACAGCCGGCGCCTAGCCATACAGTGA 1113 45.01 MQSESETKDKVEPNAHNIPPANSYFEPWWRAVEYNSIPPHSTVGNAPNASSMECLDNCSESSDDRSISNDEHIDDDDDDADKQSQQMAKSAQNVQQDAPNGPHGASSGTTVHCPCVAQPPSLELVGHSIACAPNPYQDPYYGGMMMAYGHQPLSYPAVLGMPHARMPLPHDMIQEPVFVNAKQYQGILRRRQARAKAEIEKKLIKNRKWREIYTRDYGLKVFSFALVASKFDHLLQPYLHESRHKHAMRRVRSIGGRFAKKMDGGSANCTSKEKGTDPVPARSSQSACTSASASASELSAADGSERWTGTNGQQAASRPQQYETQNIINHQIQSHNGFFGENGEEGDCSGQELGRISRDKASHSRRLAIQ 370
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 49752772 49755033 - Bma026681.2 Bma07g01396 86533
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01396 370 Gene3D - 173 263 - -
Bma07g01396 370 SMART cbf3 172 261 IPR001289 GO:0003700|GO:0006355
Bma07g01396 370 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 33 208 IPR001289 GO:0003700|GO:0006355
Bma07g01396 370 MobiDBLite consensus disorder prediction 256 320 - -
Bma07g01396 370 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Bma07g01396 370 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 33 208 - -
Bma07g01396 370 ProSiteProfiles NF-YA/HAP2 family profile. 173 261 IPR001289 GO:0003700|GO:0006355
Bma07g01396 370 MobiDBLite consensus disorder prediction 351 370 - -
Bma07g01396 370 MobiDBLite consensus disorder prediction 1 23 - -
Bma07g01396 370 MobiDBLite consensus disorder prediction 85 108 - -
Bma07g01396 370 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 236 359 IPR001289 GO:0003700|GO:0006355
Bma07g01396 370 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 236 359 - -
Bma07g01396 370 MobiDBLite consensus disorder prediction 336 370 - -
Bma07g01396 370 MobiDBLite consensus disorder prediction 36 108 - -
Bma07g01396 370 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 258 IPR001289 GO:0003700|GO:0006355
Bma07g01396 370 MobiDBLite consensus disorder prediction 38 57 - -
Bma07g01396 370 MobiDBLite consensus disorder prediction 269 320 - -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00265 Bma-Chr7:3247422 Bma07g01396 Bma-Chr7:49752772 1.38E-70 dispersed
Bma07g01396 Bma-Chr7:49752772 Bma11g00292 Bma-Chr11:2745528 9.27E-80 dispersed
Bma14g00770 Bma-Chr14:8563570 Bma07g01396 Bma-Chr7:49752772 1.46E-99 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57665 PF02045 CBFB_NFYA 7.70E-23 No_clan Bma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01396 K08064 - jre:108998712 328.946