Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma07g01396 | ATGCAGTCTGAATCTGAAACCAAAGATAAAGTAGAACCGAATGCACATAACATCCCACCAGCCAATAGTTACTTTGAACCTTGGTGGCGTGCTGTTGAATACAATTCAATTCCCCCACACTCGACTGTGGGTAATGCTCCCAACGCTTCTTCAATGGAATGCCTAGATAATTGTTCAGAGTCCAGTGATGACCGATCGATCTCTAATGATGAGCATATTGATGATGATGATGATGATGCTGACAAACAATCACAACAAATGGCTAAATCTGCACAAAATGTCCAGCAAGATGCACCAAATGGACCACATGGAGCATCCTCGGGGACGACAGTGCATTGTCCCTGTGTGGCGCAACCTCCATCACTTGAACTAGTTGGACATTCTATTGCATGTGCTCCGAATCCTTATCAGGATCCATATTATGGAGGAATGATGATGGCTTATGGACATCAACCGTTGAGTTACCCTGCTGTTCTTGGAATGCCGCATGCTAGAATGCCTTTACCTCATGACATGATACAAGAGCCAGTTTTTGTCAATGCCAAGCAATACCAAGGGATTTTAAGAAGAAGACAGGCTCGTGCTAAAGCTGAAATTGAAAAGAAGCTGATAAAAAATAGGAAGTGGAGAGAAATATACACTCGTGACTATGGACTTAAAGTTTTTTCTTTTGCTTTAGTTGCATCTAAATTTGATCATTTATTACAGCCATATCTTCATGAATCTCGGCATAAGCATGCAATGCGAAGAGTAAGGAGTATTGGAGGGCGTTTTGCCAAGAAAATGGACGGCGGATCTGCCAACTGCACGAGCAAAGAAAAAGGAACAGACCCAGTTCCAGCCAGGTCCTCGCAGTCAGCTTGTACATCAGCTTCAGCTTCAGCTTCGGAACTCTCAGCTGCTGACGGGAGTGAAAGGTGGACGGGCACCAATGGTCAACAAGCCGCCAGCCGGCCCCAACAATATGAAACCCAAAACATCATTAACCACCAAATTCAGAGTCACAATGGCTTTTTTGGTGAAAATGGGGAGGAAGGAGACTGCTCAGGCCAAGAACTAGGAAGAATTTCCCGGGACAAAGCTTCACACAGCCGGCGCCTAGCCATACAGTGA | 1113 | 45.01 | MQSESETKDKVEPNAHNIPPANSYFEPWWRAVEYNSIPPHSTVGNAPNASSMECLDNCSESSDDRSISNDEHIDDDDDDADKQSQQMAKSAQNVQQDAPNGPHGASSGTTVHCPCVAQPPSLELVGHSIACAPNPYQDPYYGGMMMAYGHQPLSYPAVLGMPHARMPLPHDMIQEPVFVNAKQYQGILRRRQARAKAEIEKKLIKNRKWREIYTRDYGLKVFSFALVASKFDHLLQPYLHESRHKHAMRRVRSIGGRFAKKMDGGSANCTSKEKGTDPVPARSSQSACTSASASASELSAADGSERWTGTNGQQAASRPQQYETQNIINHQIQSHNGFFGENGEEGDCSGQELGRISRDKASHSRRLAIQ | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 49752772 | 49755033 | - | Bma026681.2 | Bma07g01396 | 86533 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma07g01396 | 370 | Gene3D | - | 173 | 263 | - | - | |
Bma07g01396 | 370 | SMART | cbf3 | 172 | 261 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g01396 | 370 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 33 | 208 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g01396 | 370 | MobiDBLite | consensus disorder prediction | 256 | 320 | - | - | |
Bma07g01396 | 370 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 178 | 198 | IPR018362 | GO:0003677|GO:0016602 | |
Bma07g01396 | 370 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 33 | 208 | - | - | |
Bma07g01396 | 370 | ProSiteProfiles | NF-YA/HAP2 family profile. | 173 | 261 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g01396 | 370 | MobiDBLite | consensus disorder prediction | 351 | 370 | - | - | |
Bma07g01396 | 370 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Bma07g01396 | 370 | MobiDBLite | consensus disorder prediction | 85 | 108 | - | - | |
Bma07g01396 | 370 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 236 | 359 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g01396 | 370 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 236 | 359 | - | - | |
Bma07g01396 | 370 | MobiDBLite | consensus disorder prediction | 336 | 370 | - | - | |
Bma07g01396 | 370 | MobiDBLite | consensus disorder prediction | 36 | 108 | - | - | |
Bma07g01396 | 370 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 175 | 258 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g01396 | 370 | MobiDBLite | consensus disorder prediction | 38 | 57 | - | - | |
Bma07g01396 | 370 | MobiDBLite | consensus disorder prediction | 269 | 320 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma07g01396 | Bma11g00292 | CCT | |
Bma07g01396 | Bma07g00265 | CCT | |
Bma07g01396 | Bma11g00292 | ECH | |
Bma07g01396 | Bma07g00265 | ECH | |
Bma07g00265 | Bma07g01396 | ECH | |
Bma07g01396 | Bma14g00770 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma07g00265 | Bma-Chr7:3247422 | Bma07g01396 | Bma-Chr7:49752772 | 1.38E-70 | dispersed | |
Bma07g01396 | Bma-Chr7:49752772 | Bma11g00292 | Bma-Chr11:2745528 | 9.27E-80 | dispersed | |
Bma14g00770 | Bma-Chr14:8563570 | Bma07g01396 | Bma-Chr7:49752772 | 1.46E-99 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57665 | PF02045 | CBFB_NFYA | 7.70E-23 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma07g01396 | K08064 | - | jre:108998712 | 328.946 |