Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01409 ATGGGTTCCATGAATACAAATAATTGGCTTTCCTTCCCACTTTCACCAACTCACTCTTCTTTACCAATCCACCTCCAATCTACTCAGCCCCATCAGTTCTCTCTAGGGCTAGTGAATGATTCAATGGAAAACCCATTTAACACCCAAGATTGGAACTTGATTACTAACCAAGGAGGAAATGAAGTTCCAAAGGTGGCTGATTTTCTTGGGGTTACCAAATCAGAAAATCAATCAGATCTATCGGTTTTTAATGAGATCCAGTCAAATGATTCAGACTATCTATATCCAAACAATAGCATAGTTCCTCTTCAAAACACCATGGCTGATTTCCAAGAAAGCTCTAGCCATTTGCAGTCCTTGACTTTGTCAATGGGGAGTGGAAATAAAGGTTCGGCTGCATGTGAAAATAGCGAAAACAGCACCAACAGTATTGTTGAGGCAACTCCGAGAAGAACTTTGGAGACTTTCGGGCAAAGAACTTCAATTTATCGTGGGGTTACAAGGCATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGATAATAGTTGTAGAAGGGAAGGACAATCAAGAAAGGGTCGTCAAGGTGGGTATGACAAAGAAGATAAAGCAGCCAGAGCTTATGATCTTGCTGCGCTGAAATATTGGGGAACATCAACGACCACCAATTTCCCAGTGAGCAATTATGAAAAAGAAGTGGAGGAGATGAAACACATGACGAGACAAGAATTTGTAGCCTCCATTAGAAGGAAGAGTAGTGGCTTTTCTAGAGGTGCATCCATGTATCGTGGAGTTACAAGGCAAATATATAACTCTCTCTCTCTCTCTTTCTCTCTGTACTTTTTCTCTCTACTTTCTCTCTCAAGCATGTTCATCTGTGTTAACAGGCACCATCAACATGGAAGATGGCAGGCGAGAATAGGAAGAGTTGCTGGAAACAAAGATCTTTACTTGGGAACGTTCAGTACCGAGGAAGAAGCTGCAGAAGCATATGATATTGCAGCCATAAAATTTCGAGGCCTAAATGCCGTGACGAACTTCGACATGAATCGGTACGACGTGAAGAGTATTTTGGAAAGCAATACTCTCCCCATCGGAGGAGGAGCAGCCAAAAGATTGAAAGAAGCTCAAGCCTTTGAATCAACGAGAAAACGTGAAGAAATGATTGCATTAGGTTCAAGCTTTAGCTATGGCGCCGCCAGTGGATCTTCAGCTAGACTTCCTCTTCAATCTTACCCTCTTCTTCAGCAATCTTTTGAGCATTCTCAGCCCTTGATTTCTCTGCAAAATCAAGAAATCTCTCATTTTTCTCAAGACCCATCCTCGCTGCAGCAGAGTTATCTTCACCAGCTTCACTTTCATCATCAGAACTCTGGTTTTTATGCAAATCCATTTGGCCAAAGCTCTCAATTCTTCAATGGGTATGTTCATAATAATCACCCGGGTTCTGGATCATCTTCTTCATCTGTAATCATGGAGAATAATAACTATGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGTACATGAAAGCCCTCGCACCACCGGAGCCCCGTAATTGGCCTGTTGGATTGGTCCCTCGAGTCGTGGCTTAA 2571 25.87 MGSMNTNNWLSFPLSPTHSSLPIHLQSTQPHQFSLGLVNDSMENPFNTQDWNLITNQGGNEVPKVADFLGVTKSENQSDLSVFNEIQSNDSDYLYPNNSIVPLQNTMADFQESSSHLQSLTLSMGSGNKGSAACENSENSTNSIVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPVSNYEKEVEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRQIYNSLSLSFSLYFFSLLSLSSMFICVNRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKEAQAFESTRKREEMIALGSSFSYGAASGSSARLPLQSYPLLQQSFEHSQPLISLQNQEISHFSQDPSSLQQSYLHQLHFHHQNSGFYANPFGQSSQFFNGYVHNNHPGSGSSSSSVIMENNNYDFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFRYMKALAPPEPRNWPVGLVPRVVA 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49858960 49862261 + Bma026696.1 Bma07g01409 86546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01409 856 SMART rav1_2 294 354 IPR001471 GO:0003700|GO:0006355
Bma07g01409 856 SMART rav1_2 162 231 IPR001471 GO:0003700|GO:0006355
Bma07g01409 856 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 288 478 - -
Bma07g01409 856 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 268 - -
Bma07g01409 856 CDD AP2 161 227 IPR001471 GO:0003700|GO:0006355
Bma07g01409 856 Pfam AP2 domain 291 340 IPR001471 GO:0003700|GO:0006355
Bma07g01409 856 Pfam AP2 domain 162 217 IPR001471 GO:0003700|GO:0006355
Bma07g01409 856 ProSiteProfiles AP2/ERF domain profile. 261 348 IPR001471 GO:0003700|GO:0006355
Bma07g01409 856 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 288 478 - -
Bma07g01409 856 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 268 - -
Bma07g01409 856 SUPERFAMILY DNA-binding domain 295 349 IPR016177 GO:0003677
Bma07g01409 856 SUPERFAMILY DNA-binding domain 161 227 IPR016177 GO:0003677
Bma07g01409 856 ProSiteProfiles AP2/ERF domain profile. 162 225 IPR001471 GO:0003700|GO:0006355
Bma07g01409 856 CDD AP2 296 348 IPR001471 GO:0003700|GO:0006355
Bma07g01409 856 Gene3D AP2/ERF domain 291 350 IPR036955 GO:0003700|GO:0006355
Bma07g01409 856 Gene3D AP2/ERF domain 162 227 IPR036955 GO:0003700|GO:0006355
Bma07g01409 856 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700|GO:0006355
Bma07g01409 856 PRINTS Ethylene responsive element binding protein signature 163 174 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g01409 Bma14g00780 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01409 Bma-Chr7:49858960 Bma01g01707 Bma-Chr1:53121903 1.68E-78 dispersed
Bma15g01112 Bma-Chr15:44117946 Bma07g01409 Bma-Chr7:49858960 4.02E-24 dispersed
Bma07g01409 Bma-Chr7:49858960 Bma07g01412 Bma-Chr7:49890601 0 proximal
Bma01g01150 Bma-Chr1:12470822 Bma07g01409 Bma-Chr7:49858960 1.36E-72 transposed
Bma02g00408 Bma-Chr2:6248953 Bma07g01409 Bma-Chr7:49858960 4.12E-67 transposed
Bma03g01197 Bma-Chr3:18063167 Bma07g01409 Bma-Chr7:49858960 4.35E-90 transposed
Bma06g00647 Bma-Chr6:34511454 Bma07g01409 Bma-Chr7:49858960 6.52E-82 transposed
Bma07g00696 Bma-Chr7:14932798 Bma07g01409 Bma-Chr7:49858960 2.45E-09 transposed
Bma11g00738 Bma-Chr11:17624378 Bma07g01409 Bma-Chr7:49858960 9.04E-10 transposed
Bma13g01218 Bma-Chr13:45455279 Bma07g01409 Bma-Chr7:49858960 1.59E-75 transposed
Bma14g01163 Bma-Chr14:16921957 Bma07g01409 Bma-Chr7:49858960 6.30E-126 transposed
Bma14g01196 Bma-Chr14:17721162 Bma07g01409 Bma-Chr7:49858960 7.05E-126 transposed
Bma15g00429 Bma-Chr15:4647271 Bma07g01409 Bma-Chr7:49858960 3.83E-07 transposed
Bma14g00780 Bma-Chr14:8728576 Bma07g01409 Bma-Chr7:49858960 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57666 PF00847 AP2 2.90E-08 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01409 K09285 - pop:7478340 679.863