Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma07g01412 | ATGGGTTCCATGAATACAAATAATTGGCTTTCCTTCCCACTTTCACCAACTCACTCTTCTTTACCAATCCACCTCCAATCTACTCAGCCCCATCAGTTCTCTCTAGGGCTAGTGAATGATTCAATGGAAAACCCATTTCACACCCAAGATTGGAACTTGATTACTAACCAAGGAGGAAATGAAGTTCCAAAGGTGGCTGATTTTCTTGGGGTTACCAAATCAGAAAATCAATCAGATCTATCGGTTTTTAATGAGATCCAGTCAAATGATTCAGACTATCTATATCCAAACAACAGCATAGTTCCTCTTCAAAACACCATGGCTGATTTCCAAGAAAGCTCTAGCCATTTGCAGTCCTTGACTTTGTCAATGGGGAGTGGAAATAAAGGTTCGGCTGCATGTGAAAATAGCGAAAACAGCACCAACAGTATTGTTGAGGCAACTCCGAGAAGAACTTTGGAGACTTTCGGGCAAAGAACTTCAATCTATCGTGGGGTTACAAGGCATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGATAATAGTTGTAGAAGGGAAGGACAATCAAGAAAGGGTCGTCAAGGTGGGTATGACAAAGAAGATAAAGCAGCCAGAGCTTATGATCTTGCTGCGCTGAAATATTGGGGAACATCAACGACCACCAATTTCCCAGTGAGCAATTATGAAAAAGAAGTGGAAGAGATGAAACACATGACGAGACAAGAATTTGTAGCCTCCATTAGAAGGAAGAGTAGTGGCTTTTCTAGAGGTGCATCCATCATGTTCATCTGTATTAACAGGCACCATCAACATGGAAGATGGCAGGCGAGAATAGGAAGAGTTGCTGGAAACAAAGATCTTTACTTGGGAACGTTCAGTACCGAGGAAGAAGCTGCAGAAGCATATGATATTGCAGCCATAAAATTTCGAGGCCTAAATGCAGTGACGAACTTCGACATGAATCGGTACGACGTGAAGAGTATTTTGGAAAGCAATACTCTCCCCATCGGAGGAGGAGCAGCCAAAAGATTGAAAGAAGCTCAAGCCTTTGAATCAACTAGAAAACGTGAAGAAATGATTGCATTAGGTTCAAGCTTTAGCTATGGCGCCGCCAGTGGATCTTCAACTAGACTTCCTCTTCAGTCTTACCCTCTTCTTCAGCAATCTTTTGAGCATTCTCAGCCCTTGATTTCTCTGCAAAATCAAGAAATCTCTCATTTTTCTCAAGACCCATCCTCGCTGCAGCAGAGTTATCTTCACCAGCTTCACTTTCATCATCAGAACTCTGGTTTTTATGCAAATCCATTTGGCCAAAGCTCTCAATTCTTCAATGGGTATGTTCATAATAATCACCCGGGTTCTGGATCATCTTCTTCATCTGTAATCATGGAGAATAATAACTATGGGGGAGGAATATATAATCTCGGAAATGGAGTTCCAATGGCGTCGGTGTCTTCCTCTAATGGCGGTGGAGTGAGATCTGCAGAAGAACTGGCTCTTGTTAAGGTGGATTATGATATGGTTCCTGGAGGCTATGGAGGTTGGTCCACTGATCATCAGGCTAACAATGGAGTTTTCTCAATGTGGAATGATGTCTGA | 1602 | 42.38 | MGSMNTNNWLSFPLSPTHSSLPIHLQSTQPHQFSLGLVNDSMENPFHTQDWNLITNQGGNEVPKVADFLGVTKSENQSDLSVFNEIQSNDSDYLYPNNSIVPLQNTMADFQESSSHLQSLTLSMGSGNKGSAACENSENSTNSIVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPVSNYEKEVEEMKHMTRQEFVASIRRKSSGFSRGASIMFICINRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKEAQAFESTRKREEMIALGSSFSYGAASGSSTRLPLQSYPLLQQSFEHSQPLISLQNQEISHFSQDPSSLQQSYLHQLHFHHQNSGFYANPFGQSSQFFNGYVHNNHPGSGSSSSSVIMENNNYGGGIYNLGNGVPMASVSSSNGGGVRSAEELALVKVDYDMVPGGYGGWSTDHQANNGVFSMWNDV | 533 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 49890601 | 49893009 | + | Bma026699.1 | Bma07g01412 | 86549 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma07g01412 | 533 | PRINTS | Ethylene responsive element binding protein signature | 163 | 174 | IPR001471 | GO:0003700|GO:0006355 | |
Bma07g01412 | 533 | PRINTS | Ethylene responsive element binding protein signature | 302 | 322 | IPR001471 | GO:0003700|GO:0006355 | |
Bma07g01412 | 533 | SUPERFAMILY | DNA-binding domain | 268 | 321 | IPR016177 | GO:0003677 | |
Bma07g01412 | 533 | CDD | AP2 | 161 | 227 | IPR001471 | GO:0003700|GO:0006355 | |
Bma07g01412 | 533 | ProSiteProfiles | AP2/ERF domain profile. | 255 | 320 | IPR001471 | GO:0003700|GO:0006355 | |
Bma07g01412 | 533 | Pfam | AP2 domain | 162 | 217 | IPR001471 | GO:0003700|GO:0006355 | |
Bma07g01412 | 533 | Pfam | AP2 domain | 266 | 312 | IPR001471 | GO:0003700|GO:0006355 | |
Bma07g01412 | 533 | CDD | AP2 | 268 | 320 | IPR001471 | GO:0003700|GO:0006355 | |
Bma07g01412 | 533 | Gene3D | AP2/ERF domain | 162 | 227 | IPR036955 | GO:0003700|GO:0006355 | |
Bma07g01412 | 533 | Gene3D | AP2/ERF domain | 263 | 322 | IPR036955 | GO:0003700|GO:0006355 | |
Bma07g01412 | 533 | SUPERFAMILY | DNA-binding domain | 161 | 227 | IPR016177 | GO:0003677 | |
Bma07g01412 | 533 | ProSiteProfiles | AP2/ERF domain profile. | 162 | 225 | IPR001471 | GO:0003700|GO:0006355 | |
Bma07g01412 | 533 | SMART | rav1_2 | 162 | 231 | IPR001471 | GO:0003700|GO:0006355 | |
Bma07g01412 | 533 | SMART | rav1_2 | 266 | 326 | IPR001471 | GO:0003700|GO:0006355 | |
Bma07g01412 | 533 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 | 8 | 531 | - | - | |
Bma07g01412 | 533 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 8 | 531 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma07g01412 | Bma-Chr7:49890601 | Bma14g00780 | Bma-Chr14:8728576 | 0 | dispersed | |
Bma07g01409 | Bma-Chr7:49858960 | Bma07g01412 | Bma-Chr7:49890601 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57668 | PF00847 | AP2 | 1.60E-08 | CL0081 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma07g01412 | K09285 | - | pop:7478340 | 733.406 |