Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01412 ATGGGTTCCATGAATACAAATAATTGGCTTTCCTTCCCACTTTCACCAACTCACTCTTCTTTACCAATCCACCTCCAATCTACTCAGCCCCATCAGTTCTCTCTAGGGCTAGTGAATGATTCAATGGAAAACCCATTTCACACCCAAGATTGGAACTTGATTACTAACCAAGGAGGAAATGAAGTTCCAAAGGTGGCTGATTTTCTTGGGGTTACCAAATCAGAAAATCAATCAGATCTATCGGTTTTTAATGAGATCCAGTCAAATGATTCAGACTATCTATATCCAAACAACAGCATAGTTCCTCTTCAAAACACCATGGCTGATTTCCAAGAAAGCTCTAGCCATTTGCAGTCCTTGACTTTGTCAATGGGGAGTGGAAATAAAGGTTCGGCTGCATGTGAAAATAGCGAAAACAGCACCAACAGTATTGTTGAGGCAACTCCGAGAAGAACTTTGGAGACTTTCGGGCAAAGAACTTCAATCTATCGTGGGGTTACAAGGCATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGATAATAGTTGTAGAAGGGAAGGACAATCAAGAAAGGGTCGTCAAGGTGGGTATGACAAAGAAGATAAAGCAGCCAGAGCTTATGATCTTGCTGCGCTGAAATATTGGGGAACATCAACGACCACCAATTTCCCAGTGAGCAATTATGAAAAAGAAGTGGAAGAGATGAAACACATGACGAGACAAGAATTTGTAGCCTCCATTAGAAGGAAGAGTAGTGGCTTTTCTAGAGGTGCATCCATCATGTTCATCTGTATTAACAGGCACCATCAACATGGAAGATGGCAGGCGAGAATAGGAAGAGTTGCTGGAAACAAAGATCTTTACTTGGGAACGTTCAGTACCGAGGAAGAAGCTGCAGAAGCATATGATATTGCAGCCATAAAATTTCGAGGCCTAAATGCAGTGACGAACTTCGACATGAATCGGTACGACGTGAAGAGTATTTTGGAAAGCAATACTCTCCCCATCGGAGGAGGAGCAGCCAAAAGATTGAAAGAAGCTCAAGCCTTTGAATCAACTAGAAAACGTGAAGAAATGATTGCATTAGGTTCAAGCTTTAGCTATGGCGCCGCCAGTGGATCTTCAACTAGACTTCCTCTTCAGTCTTACCCTCTTCTTCAGCAATCTTTTGAGCATTCTCAGCCCTTGATTTCTCTGCAAAATCAAGAAATCTCTCATTTTTCTCAAGACCCATCCTCGCTGCAGCAGAGTTATCTTCACCAGCTTCACTTTCATCATCAGAACTCTGGTTTTTATGCAAATCCATTTGGCCAAAGCTCTCAATTCTTCAATGGGTATGTTCATAATAATCACCCGGGTTCTGGATCATCTTCTTCATCTGTAATCATGGAGAATAATAACTATGGGGGAGGAATATATAATCTCGGAAATGGAGTTCCAATGGCGTCGGTGTCTTCCTCTAATGGCGGTGGAGTGAGATCTGCAGAAGAACTGGCTCTTGTTAAGGTGGATTATGATATGGTTCCTGGAGGCTATGGAGGTTGGTCCACTGATCATCAGGCTAACAATGGAGTTTTCTCAATGTGGAATGATGTCTGA 1602 42.38 MGSMNTNNWLSFPLSPTHSSLPIHLQSTQPHQFSLGLVNDSMENPFHTQDWNLITNQGGNEVPKVADFLGVTKSENQSDLSVFNEIQSNDSDYLYPNNSIVPLQNTMADFQESSSHLQSLTLSMGSGNKGSAACENSENSTNSIVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPVSNYEKEVEEMKHMTRQEFVASIRRKSSGFSRGASIMFICINRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKEAQAFESTRKREEMIALGSSFSYGAASGSSTRLPLQSYPLLQQSFEHSQPLISLQNQEISHFSQDPSSLQQSYLHQLHFHHQNSGFYANPFGQSSQFFNGYVHNNHPGSGSSSSSVIMENNNYGGGIYNLGNGVPMASVSSSNGGGVRSAEELALVKVDYDMVPGGYGGWSTDHQANNGVFSMWNDV 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49890601 49893009 + Bma026699.1 Bma07g01412 86549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01412 533 PRINTS Ethylene responsive element binding protein signature 163 174 IPR001471 GO:0003700|GO:0006355
Bma07g01412 533 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700|GO:0006355
Bma07g01412 533 SUPERFAMILY DNA-binding domain 268 321 IPR016177 GO:0003677
Bma07g01412 533 CDD AP2 161 227 IPR001471 GO:0003700|GO:0006355
Bma07g01412 533 ProSiteProfiles AP2/ERF domain profile. 255 320 IPR001471 GO:0003700|GO:0006355
Bma07g01412 533 Pfam AP2 domain 162 217 IPR001471 GO:0003700|GO:0006355
Bma07g01412 533 Pfam AP2 domain 266 312 IPR001471 GO:0003700|GO:0006355
Bma07g01412 533 CDD AP2 268 320 IPR001471 GO:0003700|GO:0006355
Bma07g01412 533 Gene3D AP2/ERF domain 162 227 IPR036955 GO:0003700|GO:0006355
Bma07g01412 533 Gene3D AP2/ERF domain 263 322 IPR036955 GO:0003700|GO:0006355
Bma07g01412 533 SUPERFAMILY DNA-binding domain 161 227 IPR016177 GO:0003677
Bma07g01412 533 ProSiteProfiles AP2/ERF domain profile. 162 225 IPR001471 GO:0003700|GO:0006355
Bma07g01412 533 SMART rav1_2 162 231 IPR001471 GO:0003700|GO:0006355
Bma07g01412 533 SMART rav1_2 266 326 IPR001471 GO:0003700|GO:0006355
Bma07g01412 533 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 531 - -
Bma07g01412 533 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 531 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01412 Bma-Chr7:49890601 Bma14g00780 Bma-Chr14:8728576 0 dispersed
Bma07g01409 Bma-Chr7:49858960 Bma07g01412 Bma-Chr7:49890601 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57668 PF00847 AP2 1.60E-08 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01412 K09285 - pop:7478340 733.406