Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma07g01471 | ATGCTGGTAACTTTTCAGCAAACGCCTCCTTCTGGTTCAAATATGATCGACCCAGATGAATTCCCCCATCATCTCCGTTTTTCCTCTCACCGGACCTCCGACGGAAGCTATGGCCAAGAATTCAATCCGAGCGAGACGACGTCGATTGATTGGTATGTACTAGAAAGCTTAAACAATGGCGGGACATCAAATAGTTGTCAGAATTTCGAAAAAAAGAAAGAAGAGAATCAAAATCGCTCTCCTAAGCATTACGATATAATAGAATTACAGGCTGCAGAATTGTTAGCTAAGTACACCCATTGCTGCCAAGTCTGTGGAAAAGGGTTCAAACGACATGCAAATTTGAGAATGCACATGAGGGCCCACGGCGACGAGTATAAAACCAGTGCAGCTTTAAGCAACCCAATGAAAAACGACGAAAGTTGGAAGAAGAGAGAGGATTTTCCGGGAAAGTTGCCGAGAAAATACTCATGCCCGCAGGAAGGTTGCCGGTGGAATCGAAAGCACGCCAAGTTTCAGCCTCTGAAGTCGATGATTTGCGTGAAGAATCATTATAAGAGAAGCCACTGCCCTAAAATGTACATATGCAAGAGGTGCAACCAGAAGCAATTTTCAGTTCTGTCTGATTTGAAAACCCACGAGAAACACTGCGGAGATCTGAAATGGCAGTGTTCTTGCGGAACTACCTTTTCCAGAAAAGATAAGTTAATGGGTCATGTTGCTTTGTTTGTGGGTCATTCGCCATTGATGAGTTCTGTGATGAAACAGAGAAAGTCTGCGAGACAAACTGTTGATTACAGCTAG | 804 | 43.78 | MLVTFQQTPPSGSNMIDPDEFPHHLRFSSHRTSDGSYGQEFNPSETTSIDWYVLESLNNGGTSNSCQNFEKKKEENQNRSPKHYDIIELQAAELLAKYTHCCQVCGKGFKRHANLRMHMRAHGDEYKTSAALSNPMKNDESWKKREDFPGKLPRKYSCPQEGCRWNRKHAKFQPLKSMICVKNHYKRSHCPKMYICKRCNQKQFSVLSDLKTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHSPLMSSVMKQRKSARQTVDYS | 267 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 50364342 | 50365145 | - | Bma026764.2 | Bma07g01471 | 86608 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma07g01471 | 267 | SMART | c2h2final6 | 156 | 189 | IPR013087 | - | |
| Bma07g01471 | 267 | SMART | c2h2final6 | 194 | 216 | IPR013087 | - | |
| Bma07g01471 | 267 | SMART | c2h2final6 | 100 | 122 | IPR013087 | - | |
| Bma07g01471 | 267 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 18 | 262 | IPR044300 | GO:0010044|GO:0010447 | |
| Bma07g01471 | 267 | PANTHER | OS08G0562300 PROTEIN | 18 | 262 | - | - | |
| Bma07g01471 | 267 | SUPERFAMILY | beta-beta-alpha zinc fingers | 98 | 126 | IPR036236 | - | |
| Bma07g01471 | 267 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 101 | 122 | IPR013087 | - | |
| Bma07g01471 | 267 | Gene3D | Classic Zinc Finger | 82 | 151 | - | - | |
| Bma07g01471 | 267 | Gene3D | Classic Zinc Finger | 192 | 242 | - | - | |
| Bma07g01471 | 267 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 100 | 127 | IPR013087 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma07g01471 | Bma-Chr7:50364342 | Bma09g00850 | Bma-Chr9:47527530 | 3.83E-24 | dispersed | |
| Bma07g01471 | Bma-Chr7:50364342 | Bma10g00024 | Bma-Chr10:346417 | 5.23E-24 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 57671 | None | None | None | None | Bma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma07g01471 | - | - | qsu:111988431 | 337.806 |