Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01503 ATGGCCACGAACCGCTTCATCTGCGAAGTGTGCAACAAGGGTTTCCAGAGAGACCAGAACCTTCAATTACACCGGCGAGGTCACAATCTACCATGGAAGCTCCGGCAGAGAACTAATAAGGAAGTGAGGAAGAAGGTGTACGTCTGCCCGGAGAAAAACTGCGTTCACCACGAACCGTCGAGAGCCCTCGGCGACCTCACCGGAATAAAGAAACATTTCAGCAGAAAACACGGCGAGAAGAAGTGGAAGTGTGAGAAATGCTCTAAGAAATATGCAGTTCAGTCCGATTGGAAAGCTCATAGTAAAATTTGTGGGACGAAGGAGTATAAATGCGATTGTGGTACACTCTTCTCCAGGAAAGACAGCTACAATACCCACAGAGCTTTTTGCGACAATTTAGTAGATGAAAGTTCAAGATTCAATTCAAATTTCAAAGCGAATCAAACTTTCAGACAAGATTTGATTAATGGGTCCTTCTCGGTTTCGTCGAATCCTCAACAAGACCAAGTGATTTCCCCGTTTTCAAACGTTCTGCTTCCACAAAATTATGTTTTTCCAGGTGAGCCGGCTGATAATTTACTGGCAAACAGCCATCTTCTTCGTTCTGATGGGCAAAAACCTAAGATTCCAGTCTGGCTAGATTGTTCAAATTATAACTCTGCCCATTTTAGCTATCCCACTGCTAATCCTCAAATGGGTATGCAAGAACTGGTTCAATCAAACGCTGTAATGAATATGTTTGGACTTTCAAATCCTTCTGCTCAGCCACAGAACCAGTACGTTAGAAACATCTCTGGGCTGCCATTAAAATGGGGACCAAAGGAGGAAGAGGAAGAAGCAGAAGATAGAGAAAATTTGTCTCAAACGATGACGTATTTGTATTCCAACAATCAAAACAACAACCAGCAAATCTCAGCTCACATGTCAGCCACTGCACTATTGCAGAGAGCAGCTCAGATGGGCTCCACAAGACCAAACCCAGCGTTAAACAACGCCATTTTTGGGTCCATGACCTCGAGCGATAGCCCTCTGTCGCAAGTGACAGCGCCAATTTCAGATCCAGTCGAGAAGTTTCTGAACGGTCAAGGCGATCACGGCTTGATGAGCCAGATGTCTTCGTCTTCAGCTTCAGGTTCTAGTTTAGGGGACGGGTTATTGCTCGGCGATTTGAATTACTCCAAACCAGTCTTGATTTCGGGCAGTAATTTTGACCATCTGATGATGAGTAATGGAAGTCTAAACCAAAGTGGGAAACTCAAGATGGGCGGCAATGAAAGTGAGCAGATGAGTTTAACCAGAGATTTTCTCGGCGTCGGAACTGATCTTTCGAACGAGCTATTGAAGTTCGACGATCATGGCAACTACCTGAACCGGTACAGTGGAGGAGGATGA 1392 44.97 MATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKNCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSYNTHRAFCDNLVDESSRFNSNFKANQTFRQDLINGSFSVSSNPQQDQVISPFSNVLLPQNYVFPGEPADNLLANSHLLRSDGQKPKIPVWLDCSNYNSAHFSYPTANPQMGMQELVQSNAVMNMFGLSNPSAQPQNQYVRNISGLPLKWGPKEEEEEAEDRENLSQTMTYLYSNNQNNNQQISAHMSATALLQRAAQMGSTRPNPALNNAIFGSMTSSDSPLSQVTAPISDPVEKFLNGQGDHGLMSQMSSSSASGSSLGDGLLLGDLNYSKPVLISGSNFDHLMMSNGSLNQSGKLKMGGNESEQMSLTRDFLGVGTDLSNELLKFDDHGNYLNRYSGGG 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 50640066 50641835 - Bma026797.1 Bma07g01503 86640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01503 463 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Bma07g01503 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Bma07g01503 463 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 442 - -
Bma07g01503 463 SMART c2h2final6 47 77 IPR013087 -
Bma07g01503 463 SMART c2h2final6 6 28 IPR013087 -
Bma07g01503 463 SMART c2h2final6 82 102 IPR013087 -
Bma07g01503 463 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Bma07g01503 463 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 1 442 - -
Bma07g01503 463 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Bma07g01503 463 Gene3D Classic Zinc Finger 60 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01503 Bma-Chr7:50640066 Bma04g00205 Bma-Chr4:1788132 2.27E-95 dispersed
Bma10g00024 Bma-Chr10:346417 Bma07g01503 Bma-Chr7:50640066 2.44E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57676 PF12171 zf-C2H2_jaz 7.80E-05 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01503 K25870 - vvi:100248459 424.476