Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01597 ATGGGAAGCCGATCAAATTTCTACAAAAATCCTTCGATTTCTTACAAAAAAGATTTGAATCTCTCCTCTGCTCTTCAAAATCTCCAGGCTTACAACCTCGTTACGGGTAATGCTACTCAGATTAAAGAACAACCGCCTGTTCAAGAGGAGAAAAATGAGAAGAGGAAACGTCATCATGAGCCGAAAAGACTTCGTAATCAGTTTTGTGGAACTAAAGAAAGCGACGAGCCTATGTCTCACCAAGATTACATAGAAAAGAGAAGGCAATTTAACCTTTCGACGCATGATTTTCAAAATATGATGAAAAGAAAGATCATAAAAATTCAGGTTCACTTCCTTATCTCAATCTATCATCTTTTGCACACAATTATAGTGCAACTCATCTGTCTTTTTTACGATGTTTTCCTAGGATACCAAAATAAATTGGATGGTGTTAAAAGCAGAAGTGAGCAACGTTTTCCCATTCCTGGAGAACCTATTTGTGTTTTATGTGGCAAGTATGGAGAATACATATGCAATGAGACTGGTGATGATATCTGCAGCATGGAATGCAAAGTTGAACTTCTAGAAATACTTAAACTCAATGAGGGACACTCAACTAATACAATCGTCTCCACGTCTGCAACAAAATCTACATTGCGACCTCCAGAGTTAGGTGCAACAAAATCTACATTGCGACCTCCAGAGTTAGGGAAGGATACTTGGGATTATAACCGTCATCGTTGGAACAAAAAGATATCCAATCTTTGCTCTTATGAATGTTGGAAATGTCAGAGGCCTGGACACCTTGCCGAAGATTGTTTGATTTTTGTTGTCTCTCTCTCTCTAGCTTTTGTTGCAGTGAATAAAAAGACTGGTAAAGTGAGAGCTCATCTCAACTCTGTTGGCATTTGCAGGTGCAGCCAAATTAGCAAGACCATGTCAACTGCCAATTGCAATGCATGTCGTAGGTCTACAAGTTTGGCCACCTGTGTAGATTGTGGTGTTGCTTTGTGTGACAGAGATAAATCTCAAGTTTCTTGTTTCTTTATCTCCAGTGCAGGTCATTTAAACGAGCACATCCAAACTCATTTGTCTCATCAACAATATTACTCTCATAAATTGAAGCTCCTAGTAAAATGCTGCAAATCGACATGCAATGTGACTGACATCAAGGATCTTCTGGTTTGCCATTACTGCTTCAATAAAGCCTTCAACAAATTCTACGATATGTATAGTGCTACATGGAAAAGCTCTGGACTCGGAATCATCCGGGGTTCTATTTGCTGTGAAGATCACTTTGCTTGGCATAGGATGAATTGTTTTAACGCAGATGTGGAGGACGTTTGGGATGTATTGAAGGGCCAAATACAGAATGAGTTTGCAGATTTCACGTCTGCTGAGACGAATATATATACTAAACCTGAGAGGGGTCACCTATCAATTGATTTTACGTGCATGAAGTGGTTGTCTATAAACAAAAAGAAAAAAAGGAAGCGTGCCAGTTCGTTATTGGTTTTAGGAACCGGTAGTGGAGATCTATTTGCAGTTGATGTTTCTGCTGGTCAATTGAAATGGAAAGTCAGTGACTGTCATCCTGGGGGTGTTAATGCCATTTCTTTTTCTGGGGATGGCTTGTCATGCCTATACACTGGGGGTGAAGACGGAATGCTATGCGAAATTAATATCTTGACAGGAAGCGTTTTGAGGAAATTAAAAGCTTCTACAAAAGCAATATCTAGTGTGTCTGTTTCACCAGATGGAAAGATGATATCAACAGCAGCGGCTCAATTGAAGATTTTCAATTGTTCTGATCACAAAAAGATACACAAGTTTTCTGGGCATCCTACTTTTGTGCGATGTATGATCTTCACTGAAGACGGAAGGTACATTTTGTCATCTGCGATTGGCGAAAGATATATTGCAGTTTGGATGATTGATGGCAAGAAAAAGAAGTCTGCAAGCTGTGTTCTTGGAATGGAGCATCCTGCAGTCTTTCTTGATAGCAGGTGCACTGAGGGAGAGGGAGTGGATGGAGCAGGTCTGTCTGTTTTGGCCATTTCTGAAGTTGGTACTTGTTATTATTGGTCCGGAAGAAACCTTGCCGAGTTACGAAATACAAAGCCAACAAAAGTCTCATCATGTTTTGAAGAGAACTATAGAGGCTCGTTACCCTCAATATTTGCTGCAAAGTTACTTGCTGTTCGCAAAAGTGGGTCTGGGCAACTACTTCTTGCCCATGGATTGATTGTAAAGCCAATCTTTCAAAAAGCTCTCGTTGAATATGGAACTGATGTAGTGTTAAAATGCTCACGAGATGGAGTTCTTCTGGCTACTAGCCAATCACTCTCAAAGTCAAAAAAGGGGATACATGCACCAAATCAGGTCACTGCAGGAGATCGTGCTAATGCAGAAGATGCATTACGTCCAATCCCTAGGGCATTTGATTCTCATGAACAAAATTCGATTGCTGATCCTGATGAAGGAATTACTGAAAAATTGAAGATGTTTAAAAGTGTTGTTTATGTTTTCCGTGCAGATGACATTTTGAAACTTGGCTCCACAAGTAATAGCATGGAGAATAGATTAAGATCATCAGACATACTTAGTAGTGGAGATGATATTTCTTGTCAATCTGTCCTTAAGTCTACAATACTTAAGCACACTGATCTTGAATCCATTATACCAGAGAAAAAGTTACGAGCAGCCGTTTTGTCAATGACACCCAACGATGCAATCAAGTTGCTTGGAACCTTGGTTGAGATGTGGAAATCAAGGTTTGTGACTAGCTTTATGCATGTTTATATGTCTTTATATTTAAGGATAGTTAGTTGA 2814 39.59 MGSRSNFYKNPSISYKKDLNLSSALQNLQAYNLVTGNATQIKEQPPVQEEKNEKRKRHHEPKRLRNQFCGTKESDEPMSHQDYIEKRRQFNLSTHDFQNMMKRKIIKIQVHFLISIYHLLHTIIVQLICLFYDVFLGYQNKLDGVKSRSEQRFPIPGEPICVLCGKYGEYICNETGDDICSMECKVELLEILKLNEGHSTNTIVSTSATKSTLRPPELGATKSTLRPPELGKDTWDYNRHRWNKKISNLCSYECWKCQRPGHLAEDCLIFVVSLSLAFVAVNKKTGKVRAHLNSVGICRCSQISKTMSTANCNACRRSTSLATCVDCGVALCDRDKSQVSCFFISSAGHLNEHIQTHLSHQQYYSHKLKLLVKCCKSTCNVTDIKDLLVCHYCFNKAFNKFYDMYSATWKSSGLGIIRGSICCEDHFAWHRMNCFNADVEDVWDVLKGQIQNEFADFTSAETNIYTKPERGHLSIDFTCMKWLSINKKKKRKRASSLLVLGTGSGDLFAVDVSAGQLKWKVSDCHPGGVNAISFSGDGLSCLYTGGEDGMLCEINILTGSVLRKLKASTKAISSVSVSPDGKMISTAAAQLKIFNCSDHKKIHKFSGHPTFVRCMIFTEDGRYILSSAIGERYIAVWMIDGKKKKSASCVLGMEHPAVFLDSRCTEGEGVDGAGLSVLAISEVGTCYYWSGRNLAELRNTKPTKVSSCFEENYRGSLPSIFAAKLLAVRKSGSGQLLLAHGLIVKPIFQKALVEYGTDVVLKCSRDGVLLATSQSLSKSKKGIHAPNQVTAGDRANAEDALRPIPRAFDSHEQNSIADPDEGITEKLKMFKSVVYVFRADDILKLGSTSNSMENRLRSSDILSSGDDISCQSVLKSTILKHTDLESIIPEKKLRAAVLSMTPNDAIKLLGTLVEMWKSRFVTSFMHVYMSLYLRIVS 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 51236371 51251141 - Bma026892.1 Bma07g01597 86734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01597 937 Gene3D - 142 199 - -
Bma07g01597 937 MobiDBLite consensus disorder prediction 64 80 - -
Bma07g01597 937 ProSiteProfiles Zinc finger CCHC-type profile. 254 267 IPR001878 GO:0003676|GO:0008270
Bma07g01597 937 MobiDBLite consensus disorder prediction 39 80 - -
Bma07g01597 937 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 494 701 IPR011047 -
Bma07g01597 937 SMART WD40_4 598 638 IPR001680 GO:0005515
Bma07g01597 937 SMART WD40_4 558 595 IPR001680 GO:0005515
Bma07g01597 937 SMART WD40_4 514 555 IPR001680 GO:0005515
Bma07g01597 937 Gene3D - 458 741 IPR015943 GO:0005515
Bma07g01597 937 PANTHER OS03G0300300 PROTEIN 441 922 - -
Bma07g01597 937 PANTHER OS03G0300300 PROTEIN 441 922 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01597 K14546 UTP5, WDR43; U3 small nucleolar RNA-associated protein 5 - csv:101213788 549.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01597 Bma-Chr7:51236371 Bma14g00207 Bma-Chr14:2559489 7.95E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g529 . . . . . . Bma07g01597 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0378 . . . Csa05g00417 Chy09g01092 . . Blo19g00254 . Bda09g00099 Bpe08g01430 . . . . . . . . . . . . Bhi12g00440 . . Lac11g2280 Hepe06g1668 . Lcy12g1825 Cla01g00393 Cam01g0410 . . Clacu01g0411 Cmu01g0392 Cre09g2118 Lsi09g00419 . . Cme09g01621
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007402 1 2 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 34