Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01620 GTGTTTAAGCACGGTAATATGGGTTCAGAGCCTAGCTACCAGCCATCAGAGCCAAAGCTATGTGCAAACAACTGCGGCTTTTTTGGCTCCGCCTGCACGGAAAATCTTTGCTCAAAATGTTACAGAGATTTGCGGGTCAAAGAAGAGCAAGCCGCATCGGCAAAAGCAGCAATGGAGAAATCCCTGCATCTCGAATCACCGAAGTCATCTGATCATGACAATCAGACGATAGTTGTTCTTCCAACACCTCCAGTGCAGCCCTCTACTGGTTCATCTTCATCTTCATCTTCCGATCAATGTGAGCCACCGAAAACTCGGAACCGGTGCCTGAGCTGTAACAAAAAGGTGGGATTGACGGGTTTTGTATGCAAGTGCGGTAGCACGTATTGTGGCACACATCGTCATCCGGAGAAGCATGCTTGTCCCTTTGATTTCAAGGGAATTGGTCGGGATGAAATTGCCAAGGCAAATCCAGTGGTGAAGGCTGATAAGGTGGAGAGGTTCTGA 507 48.32 VFKHGNMGSEPSYQPSEPKLCANNCGFFGSACTENLCSKCYRDLRVKEEQAASAKAAMEKSLHLESPKSSDHDNQTIVVLPTPPVQPSTGSSSSSSSDQCEPPKTRNRCLSCNKKVGLTGFVCKCGSTYCGTHRHPEKHACPFDFKGIGRDEIAKANPVVKADKVERF 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 51748742 51749248 + Bma026917.1 Bma07g01620 86757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01620 168 Gene3D - 6 68 - -
Bma07g01620 168 SUPERFAMILY AN1-like Zinc finger 95 163 IPR035896 -
Bma07g01620 168 PANTHER AN1-TYPE ZINC FINGER PROTEIN 10 168 - -
Bma07g01620 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 67 - -
Bma07g01620 168 ProSiteProfiles Zinc finger AN1-type profile. 103 149 IPR000058 GO:0008270
Bma07g01620 168 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 10 168 - -
Bma07g01620 168 MobiDBLite consensus disorder prediction 71 105 - -
Bma07g01620 168 Gene3D - 86 164 IPR035896 -
Bma07g01620 168 SMART A20_3 18 42 IPR002653 GO:0003677|GO:0008270
Bma07g01620 168 SMART AN1_Zf_4 109 146 IPR000058 GO:0008270
Bma07g01620 168 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
Bma07g01620 168 MobiDBLite consensus disorder prediction 57 105 - -
Bma07g01620 168 Pfam AN1-like Zinc finger 111 145 IPR000058 GO:0008270
Bma07g01620 168 Pfam A20-like zinc finger 20 42 IPR002653 GO:0003677|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01620 - - - jre:109010927 207.223
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00191 Bma-Chr7:2413910 Bma07g01620 Bma-Chr7:51748742 4.14E-17 dispersed
Bma07g01620 Bma-Chr7:51748742 Bma11g00222 Bma-Chr11:1989441 1.31E-45 dispersed
Bma10g01161 Bma-Chr10:40090966 Bma07g01620 Bma-Chr7:51748742 2.71E-23 dispersed
Bma07g01620 Bma-Chr7:51748742 Bma01g01951 Bma-Chr1:72061073 3.07E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g463 . . . . . . Bma07g01620 . . . . Cma15g01177 . Car15g01065 . . Cpe05g00274 . . . . . . . . . . . . . . . . . . . . Chy09g01148 . . . . Bda09g00071 . . . . . . Cmo15g01238 . . . . . . . . . . . . . . . . . . . . . . . Cme09g01680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005235 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 4 2 39