Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01621 ATGGCCGCTTCTAATAGTAGCACCTACAGAAATGCCTTTTCCAGAAACTCTCTTAAGGTCGATAAACCTCTACCTTTCAACTCCAATCCCAAGCATTCCGCCAAATCCAAGCTGCCCAACTCGTCTCTCCGCCGCAGCTGCCCCGCATCGCTAGCCAGCGTCACCGGAGATGATGCTGGAGTGGGACTACAGAAGATCTTGTCATTGCTTGAATCCGAGGATTATGATGTGAGAATTCATGCTGTCAAAGTGGTGGCCAATCTAGCTGCTGAAGAAACAAATCAGCAGAAGATTGTAGAGGCTGGTGGTCTCACGTCTTTACTGATGCTGCTTAAAAGCTCCGAGGACGAGACTATACATCGAGTTGCTGCTGGTGCAATTGCAAACCTGGCAATGAATGAAACCAACCAAGAGCTCATAATGGCTCAAGGAGGCATTGGTTTACTGTCCATGACTGCAGCTAATGCCGAGGATCCTCAAACCCTACGAATGGTTGCTGGAGCAATTGCTAATCTTTGTGGCAATGATAAATTGCAGATCAAGTTAAGGGTTGAAGGTGGTATCAAGGCATTGTTGGGTATGGTTAGAAGTAGGCATCCCGATGTTCTTGCACAAGTTGCTCGAGGAATAGCAAATTTTGCTAAGTGTGAGTCGAGAGCATCTACACAAGGAACTAAAACTGGAAGATCTTTCTTGATTGAGGATGGCACTCTTCCATGGATTGTTCAGAATGCTAATAATGAAGCATCCACAATCAAGCGACATATTGAGCTTGCTCTCTGTCACTTAGCTCAACATGAAGTGAATGCAAAAGACATGATTAGTGGAGGTGCCTTATGGGAGCTTGTACGCATAGCTCGTGACTGTTCACGAGAAGACATAAGAAATCTTGCCTATCGAACTTTAAATTGCAGTCCAGCCTTCCAAGCCGAACTCCGGCGATTACGGATCAATTGTTGA 960 45.73 MAASNSSTYRNAFSRNSLKVDKPLPFNSNPKHSAKSKLPNSSLRRSCPASLASVTGDDAGVGLQKILSLLESEDYDVRIHAVKVVANLAAEETNQQKIVEAGGLTSLLMLLKSSEDETIHRVAAGAIANLAMNETNQELIMAQGGIGLLSMTAANAEDPQTLRMVAGAIANLCGNDKLQIKLRVEGGIKALLGMVRSRHPDVLAQVARGIANFAKCESRASTQGTKTGRSFLIEDGTLPWIVQNANNEASTIKRHIELALCHLAQHEVNAKDMISGGALWELVRIARDCSREDIRNLAYRTLNCSPAFQAELRRLRINC 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 51760109 51774028 + Bma026918.1 Bma07g01621 86758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01621 319 Gene3D - 55 151 IPR011989 -
Bma07g01621 319 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 102 145 IPR000225 GO:0005515
Bma07g01621 319 PANTHER CENTROMERE PROTEIN E 28 314 - -
Bma07g01621 319 SMART arm_5 47 90 IPR000225 GO:0005515
Bma07g01621 319 SMART arm_5 91 132 IPR000225 GO:0005515
Bma07g01621 319 SMART arm_5 133 174 IPR000225 GO:0005515
Bma07g01621 319 SMART arm_5 175 215 IPR000225 GO:0005515
Bma07g01621 319 MobiDBLite consensus disorder prediction 1 15 - -
Bma07g01621 319 Gene3D - 152 315 IPR011989 -
Bma07g01621 319 Pfam Armadillo/beta-catenin-like repeat 94 131 IPR000225 GO:0005515
Bma07g01621 319 PANTHER KINESIN-LIKE PROTEIN 28 314 - -
Bma07g01621 319 SUPERFAMILY ARM repeat 62 303 IPR016024 -
Bma07g01621 319 MobiDBLite consensus disorder prediction 29 44 - -
Bma07g01621 319 MobiDBLite consensus disorder prediction 1 44 - -
Bma07g01621 319 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 61 103 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01621 - - K10396 csin:114308492 454.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01621 Bma-Chr7:51760109 Bma12g00119 Bma-Chr12:1796994 9.42E-10 dispersed
Bma12g00128 Bma-Chr12:1880330 Bma07g01621 Bma-Chr7:51760109 1.10E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g462 . . Bda06g00057 . . . Bma07g01621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00360 . . . . . Bda09g00070 . . . . . . . . . . . . Cpe13g00198 Bhi12g00357 . . . . . Lcy12g1744 Cla01g00338 Cam01g0351 Cec01g0347 Cco01g0359 Clacu01g0355 Cmu01g0335 Cre09g2175 Lsi09g00364 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019360 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4