Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01622 ATGGACGGCCATTCTCTTCCATTCCCTTTTCACACCAGAGGTTTTCACCAGGAGCAGCATCAGTTTCAAACATCGGAGGACGAACAAACTGGAAGCAGCGGACTGAACAACAGAACCCAGATCAAGCGAAACCGGGATGACAGTATTGAGGACTCCGGCGCTGGAGAAAGCAGCAAGGAGGGCGGCACAGGTGGTGGAGAGGGCGAGATGACCAGAAGGCCGCGAGGCCGACCCGCTGGGTCAAAAAACAAGCCGAAGCCGCCCATCATCATCACCCGCGACAGTGCCAACGCCCTTCGGACCCACGTCATCGAGGTCACTGATGGCTGTGACATCGTCGAGAGCATTGCCACCTTCGCCCGCCGCCGGCAGCGTGGGCTTTGCATCATGAGCGGGACCGGCACTGTCATGAACGTGTCAATAAGACAACCATCATCTCCCAGTGCAATAGTCAATTTACACGGCCGATTTGAAATTCTTTCTCTTGCCGGATCTTTTCTCCCTCCTCCTGCACCACCTGCGGCTACGAGCTTCACAATATACTTAGCTGGAGTGGTCGGTGGAAGCGTCGTCGGAACCCTAATTGCCTCCGGCCCAGTTGTCATAATGGCGGCTTCGTTTAGCAACGCAGCATACGAGAGGCTTCCTCTCGACGAAGATGATCCGCCGTTGCCGATGCCAGGCCGTGGTTTAGGGTCGCCTAGTGAAGTACCTGATCAACAACAGCAGCTGCAACAACAACTTTTAGCAGATTCCAATGTTGCAAATTTATTTCATGGGTTGCCTCCTAATCTTCTCAACTCCATTCAGTTGCCTAACGAAGGGTATTGGGCAACTGGCCGACCACCTAACTGA 855 54.15 MDGHSLPFPFHTRGFHQEQHQFQTSEDEQTGSSGLNNRTQIKRNRDDSIEDSGAGESSKEGGTGGGEGEMTRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVESIATFARRRQRGLCIMSGTGTVMNVSIRQPSSPSAIVNLHGRFEILSLAGSFLPPPAPPAATSFTIYLAGVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLDEDDPPLPMPGRGLGSPSEVPDQQQQLQQQLLADSNVANLFHGLPPNLLNSIQLPNEGYWATGRPPN 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 51775117 51775984 - Bma026919.2 Bma07g01622 86759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01622 284 ProSiteProfiles PPC domain profile profile. 96 228 IPR005175 -
Bma07g01622 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 283 - -
Bma07g01622 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 227 - -
Bma07g01622 284 Gene3D - 99 221 - -
Bma07g01622 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 209 IPR005175 -
Bma07g01622 284 MobiDBLite consensus disorder prediction 1 90 - -
Bma07g01622 284 MobiDBLite consensus disorder prediction 16 39 - -
Bma07g01622 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 283 IPR014476 GO:0003680
Bma07g01622 284 MobiDBLite consensus disorder prediction 40 54 - -
Bma07g01622 284 MobiDBLite consensus disorder prediction 216 243 - -
Bma07g01622 284 CDD DUF296 100 167 IPR005175 -
Bma07g01622 284 PIRSF ESCAROLA 11 283 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01622 Bma-Chr7:51775117 Bma02g01165 Bma-Chr2:53776721 4.89E-78 dispersed
Bma12g00129 Bma-Chr12:1890793 Bma07g01622 Bma-Chr7:51775117 3.39E-56 dispersed
Bma12g00127 Bma-Chr12:1877282 Bma07g01622 Bma-Chr7:51775117 2.53E-113 wgd
Bma14g00570 Bma-Chr14:6137009 Bma07g01622 Bma-Chr7:51775117 6.25E-18 wgd
Bma05g00788 Bma-Chr5:44846922 Bma07g01622 Bma-Chr7:51775117 2.11E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01622 - - vvi:100265031 372.089