Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01627 ATGCAAGAACCAGGCTTGGGAATGATCGCCGCCGTAGCAGGCTGTGGTTCTGGTTTGAGCGGCGATTTATCAGTCTCCGGCGACCACCGTCACCGGCAAATCAAGGCTGAGATAGCCGGTCATCCAATATACGAGCAGCTTCTCGCCGCCCACGTGGCCTGTCTTCGGGTAGCTACCCCTATTGATCAGTTGCCGCTCATAGACGCGCAGTTGGCGCAATCAGAACATCTTTTACGCTCTTATTCGGCGAACTCCCAGCATCACCATGGCCATTCTCTACCCCCCCATGAGCGCCAAGAGCTTGACAACTGCTTGGCACAGTATCTTTTAGTTTTGTGTTCTTTTAAAGAACAGCTTCAACAACATATTAGAGTTCATGCTGTTGAAGCTGTCATGGCCTGCCGTGATATTGAAAACACTTTACAATCTCTCACTGGAGCTAGTCTTGGAGAAGGTACAGGAGCAACAATGTCAGATGAAGAAGAAGATGTGCAGATGGATTTCTCGTTGGACCCATCTGGTGCAGATGGCCATGACATGATGGGTTTTGGCCCTCTTCTTCCTACTGAATCTGAAAGATCTTTAATGGAGAGGGTTCGACAAGAACTCAAGATTGAGTTGAAGCAGTGTAACTTTCATCTGACGTTGTTGCAGGGTTTTAAGTCTAGAATTGAAGATGTTAGAGAAGAAATACTAAGGAAAAGAAGGGCTGGAAAATTACCCAGTGATACCACTACTGTGCTAAAAACTTGGTGGCAACAGCATTCTAAGTGGCCTTACCCAACTGAAGATGATAAGGCAAAGCTAGTGGAGGAGACAGGATTGCAGTTGAAACAAATAAACAACTGGTTCATCAACCAAAGAAAGAGAAATTGGAATAGCAATTCTCAATCTGTGACATCCTTAACGTCCAAGCGCAAGAGATAA 927 45.95 MQEPGLGMIAAVAGCGSGLSGDLSVSGDHRHRQIKAEIAGHPIYEQLLAAHVACLRVATPIDQLPLIDAQLAQSEHLLRSYSANSQHHHGHSLPPHERQELDNCLAQYLLVLCSFKEQLQQHIRVHAVEAVMACRDIENTLQSLTGASLGEGTGATMSDEEEDVQMDFSLDPSGADGHDMMGFGPLLPTESERSLMERVRQELKIELKQCNFHLTLLQGFKSRIEDVREEILRKRRAGKLPSDTTTVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWNSNSQSVTSLTSKRKR 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 51860220 51864225 + Bma026924.1 Bma07g01627 86764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01627 308 Pfam KNOX2 domain 95 145 IPR005541 GO:0003677|GO:0005634
Bma07g01627 308 CDD homeodomain 234 295 IPR001356 GO:0003677
Bma07g01627 308 ProSiteProfiles 'Homeobox' domain profile. 231 294 IPR001356 GO:0003677
Bma07g01627 308 SMART KNOX2_2 91 146 IPR005541 GO:0003677|GO:0005634
Bma07g01627 308 Pfam Homeobox KN domain 251 290 IPR008422 GO:0003677|GO:0006355
Bma07g01627 308 Pfam KNOX1 domain 33 75 IPR005540 GO:0003677|GO:0005634
Bma07g01627 308 SMART HOX_1 233 298 IPR001356 GO:0003677
Bma07g01627 308 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 308 - -
Bma07g01627 308 SMART KNOX1_2 32 76 IPR005540 GO:0003677|GO:0005634
Bma07g01627 308 Gene3D - 230 303 - -
Bma07g01627 308 SUPERFAMILY Homeodomain-like 233 299 IPR009057 -
Bma07g01627 308 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 308 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g01627 Bma14g00577 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01627 Bma-Chr7:51860220 Bma08g00095 Bma-Chr8:1177722 3.80E-25 dispersed
Bma04g00080 Bma-Chr4:660429 Bma07g01627 Bma-Chr7:51860220 6.08E-122 transposed
Bma14g00577 Bma-Chr14:6216736 Bma07g01627 Bma-Chr7:51860220 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57686 PF03791 KNOX2 3.90E-16 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01627 - - csv:101206054 506.138