Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01629 ATGACGTCGTATCAGGAGCAGGAGTTCGATCACAACGACGACGGAGCCAACTCCGATCTCAGCACCAGCGCTGGCGACCCGGAAGAAGACCCTCCGACGACGGAGCTCAGAAATTATAAGATGGCTTTTCGAGCTGCCCCGATGAAAGAAGAACCGGTCGAGTCCGACCTAATATCGGACCACGAGGAGAAGACGAAGCTGCCGCCGGAACCGTCCATTGGGGTGCTTCCCGTCGCGATGAAGCTGCCTTTGCAGATGCCGGTGAGTACACCTCGGAGGGCTACGAAGGACCGGCACACCAAGGTAGAGGGACGAGGTCGGAGGATTCGAATACCCGCTACCTGCGCTGCCCGAATATTTCAGCTGACCCGAGAATTGGGTCACAAATCGGACGGTGAGACCGTTCGGTGGCTTCTCGAACACGCGGAGCAAGCGATAATTGAGGCCACAGGAACCGGAACTGTGCCAGCCATCGCCGTCTCCGTAGGTGGGACCCTTAAAATCCCGACCACTGCTAACTCCGACGGCCTGAGCAATCACGAGAATAAAAAGAGAAAGCGGCCATCGAACTCTGAGTTCTTCGACATAAACGAAGCGGTTTCACACTCAACCGGGTTCGCTCCAGTCCAACCGGTAACCCCTACAGCGGCGATTCCACAGGGCCTTTTACCAGTATGGGCCGTGGGAAACGCGGGGATGATGGTTCCCGCTAACGCCTTCTGGATGATTCAGGCTGCGCCTACTCCCACAGGCCAGGTTACCGCCGCCGGACCGTCTAACCAAAATCCTCAGTTATGGACCATATCGCCGACTGTAACGCAGGTTTTCAACATGTCTGCGAGACCCATTTCCTCTTTCGTCTCAAATCAGCCAGTAGGGGTAACTATTCCGTCTGGGATCGAGATCCGGCCGCCAGCGCTCTCCTTCTGCTACAGCTTGTCGACTTCAGCCGTCAGCACGAGCACTTCCGGGCCCAAAACGGCTGAGAAATCAGCTACTATGGCGGCGCCTAGCGTGAGCTCTAGTGGCAGCGGAAATGGCGGGTCCAAAGCTCAGATGCTCAGGGATTTTTCATTGGAGATTTTTGACAAGCAGGAGTTACAGTTTATGGGTAGGAATGGGAATAACCAGAAGACACAATCTTCTTTGAAACCATGA 1158 55.35 MTSYQEQEFDHNDDGANSDLSTSAGDPEEDPPTTELRNYKMAFRAAPMKEEPVESDLISDHEEKTKLPPEPSIGVLPVAMKLPLQMPVSTPRRATKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVGGTLKIPTTANSDGLSNHENKKRKRPSNSEFFDINEAVSHSTGFAPVQPVTPTAAIPQGLLPVWAVGNAGMMVPANAFWMIQAAPTPTGQVTAAGPSNQNPQLWTISPTVTQVFNMSARPISSFVSNQPVGVTIPSGIEIRPPALSFCYSLSTSAVSTSTSGPKTAEKSATMAAPSVSSSGSGNGGSKAQMLRDFSLEIFDKQELQFMGRNGNNQKTQSSLKP 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 51889012 51890169 - Bma026926.1 Bma07g01629 86766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01629 385 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 380 IPR005333 GO:0003700
Bma07g01629 385 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 7 380 - -
Bma07g01629 385 MobiDBLite consensus disorder prediction 1 74 - -
Bma07g01629 385 Pfam TCP family transcription factor 94 183 IPR017887 -
Bma07g01629 385 MobiDBLite consensus disorder prediction 47 68 - -
Bma07g01629 385 ProSiteProfiles TCP domain profile. 95 149 IPR017887 -
Bma07g01629 385 MobiDBLite consensus disorder prediction 169 191 - -
Bma07g01629 385 MobiDBLite consensus disorder prediction 320 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01629 - - - zju:107405250 441.039
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01629 Bma14g00579 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01629 Bma-Chr7:51889012 Bma15g00272 Bma-Chr15:2657284 6.74E-34 dispersed
Bma10g01183 Bma-Chr10:41830747 Bma07g01629 Bma-Chr7:51889012 5.35E-47 transposed
Bma14g00579 Bma-Chr14:6236461 Bma07g01629 Bma-Chr7:51889012 6.97E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g416 . . . . . . Bma07g01629 Bma14g00579 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0740 Cone9ag0744 . . . . . Blo19g00306 Bda07g00504 Bda09g00062 Bpe08g01471 Bpe11g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004457 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57687 PF03634 TCP 4.70E-28 No_clan Bma TF